Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03721 ATGGCAGAGCTCACTCCGAAGAAGGAAAACCCCAACCTTCTGCTGGGCCGGTTCGAGCTGGGAAAACTCCTGGGGCACGGAACCTTCGCCAAGGTCCACCATGCCAGGAACATCAAAACCGGGGAAGGAGTGGCCATCAAGATCATAAACAAGGAAAAGATCCTCAAGGGCGGTCTGGTGTCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGAGTCCGCCACCCCAACATCGTCCAACTCTTCGAAGTCATGGCCACCAAAACCAAGATCTACTTCGTCATGGAGTTCGTGCGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGAAGGTTGAAGGAAGAGGTTGCCAGAAAGTACTTCCAGCAGCTGATTTCCGCGGTGGAGTTTTGCCATGCCCGCGGCGTGTTCCACAGGGACATCAAGCCCGAGAATTTGTTGCTGGATGAGGATGGGAACCTTAAAGTCTCCGACTTCGGACTCAGTGCTGTGTCGGATCAGATTAGGCAGGACGGGCTATTCCACACGTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTTTTGGCGCGGAAAGGGTACGATGGTGCCAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCGGGTTATTTGCCTTTCCATGATCGTAATGTTATGGCCATGTATAAGAAGATTTACAGGGGTGAGTTTCGGTGTCCCAGATGGTTCTCTCCTGAACTTACTAGACTTCTCTGTGGGCTTCTTGATACCAACCCTCAGACCAGGATTTCTATTCCTGAAATCATGGAAAATCGGTGGTTCAAGAAGGGTTTCAAGCAGATAAAGTTCTATGTGGAGGATGATAGGGTTTGTAGTTTTGATGATAAGTTGCAGTTGCAGCCCCATGATGGTGGTGGGGATGATGATTTGGCAACATCGGATTCTGAGGTTGAAATCAGGAGGAAGAATAGTCATAATGCTTCCTTGCCAAGGCCTGCTAGTTTGAATGCATTTGACATCATATCGTTTTCTCAGGGATTTGATCTATCTGGGTTGTTTGAGGAAAAGGGGGACGAGGCAAGGTTTGTTTCTTCTGCTCCAGTGTCTAAGATTATATCCAAATTGGAGGAGGTTGCTCAGTTGGTTAGCTTCACGGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGCTCTAGAGAAGGCGTGAAGGGTCCTTTGACCATTGCAGCTGAGATTTTTGAGTTGACACCTTCCTTGGTGGTTGTGGAGGTGAAGAAAAAGGGAGGCGATAAGGCAGAGTATGACAGGTTTTGTAACTCTGAGTTGAGACCCGCATTGGAGAATTTGGTTAAGGAGGAATCTGCTTCTTCGTCTTACCAATCTACACACATTGATTCTGAAATGCATCAACGAACACTATCTGACTCTGCCCTTAACATTCATTCAGATAGTGAAAGTTTGTATCGACAAGACTTGCCTGAAGTAGAAAAAACTAGTATCCGAAAACATGGTGAATCAATATTTGAAATCTCATAG 1530 0.4778 MAELTPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEFVRGGELFNKVAKGRLKEEVARKYFQQLISAVEFCHARGVFHRDIKPENLLLDEDGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYRGEFRCPRWFSPELTRLLCGLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDDKLQLQPHDGGGDDDLATSDSEVEIRRKNSHNASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPVSKIISKLEEVAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYDRFCNSELRPALENLVKEESASSSYQSTHIDSEMHQRTLSDSALNIHSDSESLYRQDLPEVEKTSIRKHGESIFEIS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03721 509 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 444 - -
Vimu11g03721 509 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03721 509 CDD STKc_SnRK3 17 271 - -
Vimu11g03721 509 SUPERFAMILY Protein kinase-like (PK-like) 14 273 IPR011009 -
Vimu11g03721 509 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03721 509 FunFam Non-specific serine/threonine protein kinase 330 448 - -
Vimu11g03721 509 FunFam Non-specific serine/threonine protein kinase 8 322 - -
Vimu11g03721 509 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vimu11g03721 509 CDD CIPK_C 334 444 - -
Vimu11g03721 509 Pfam NAF domain 330 386 IPR004041 GO:0007165
Vimu11g03721 509 ProSiteProfiles NAF domain profile. 328 352 IPR018451 GO:0007165
Vimu11g03721 509 Gene3D Kinase associated domain 1, KA1 330 450 - -
Vimu11g03721 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vimu11g03721 509 Gene3D Transferase(Phosphotransferase) domain 1 8 326 - -
Vimu11g03721 509 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vimu11g03721 509 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03721 Vimu-Chr11 59244604 59246133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03721 4 463 CBL-interacting serine-threonine protein kinases AT4G18700 77.657 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu11g03721 Pkinase 3.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03721 - - gmx:100807567 875.159