Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03712 ATGGCCGAAGTACAAAGTGGCCAAGCGAGTGAAGGGATTAAGCTGTTTGGAACAACGATCAGCTTGCATGGTAGAGAAAGAAGAGAAGATGATAAAGAGAGTGAAGAGAAGAGACCTGATAGGATCATACCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGAGCCCTTCGCAACGTACCCATAGGGGCAGGTCGCCGGAAGGCCAAACCGCCCTGCCATGACCCTACAGGATTTCTCGACGCGTCCACGGTTCAACAACAGTTTGGTTTGGAAGATAGGTTGATCTTGGATCAATGGCATGTTGCCACCATCACTCACGACGATTTCCGGCAGTTTTTTCCTTCTAAAAGGCGGAGGATAAACTCAGGTGAGCATGAAAGTCAAAAAGAATTTGTTACGAGGCACGAAATCACAGAACATAGGAAGGAGGGTTTAAAAGGCAGTGACAGTGTAAAGCTTATCTGA 546 0.478 MAEVQSGQASEGIKLFGTTISLHGRERREDDKESEEKRPDRIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCHDPTGFLDASTVQQQFGLEDRLILDQWHVATITHDDFRQFFPSKRRRINSGEHESQKEFVTRHEITEHRKEGLKGSDSVKLI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03712 181 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Vimu11g03712 181 PANTHER CYCLIC DOF FACTOR 2 29 137 IPR045174 GO:0003700|GO:0006355
Vimu11g03712 181 MobiDBLite consensus disorder prediction 21 39 - -
Vimu11g03712 181 MobiDBLite consensus disorder prediction 1 39 - -
Vimu11g03712 181 Pfam Dof domain, zinc finger 41 96 IPR003851 GO:0003677|GO:0006355
Vimu11g03712 181 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03712 Vimu-Chr11 59131535 59132628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03712 8 149 C2C2-Dof Transcription Factor Family AT2G34140 53.086 1.33e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g03712 zf-Dof 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03712 - - vra:106779806 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03712 11 59131535 59132628 Vimu11g03712 11 59131535 59132628 ECH