Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03705 ATGTCTTCTCCAGTAATCTGCGAGATTCTCCTCTCTGGCTTCACCATAAACTCTTCTCTAAGACGCAGGACACACTTGGTTCAATCTTTCTCGGTTATTCATCAATCAATTATTGCACAAATAGCACCGATGGCTTCTCCCGGTGGAGCCTGTTCATCTGGGTCCAGTTCTCTTCAAAACTCTGGGTCCGAGGGCGACCGAGACATGGTGGATCAGAGGAAGAGGAAGAGAATGCAATCGAACAGGGAATCGGCACGTAGATCTCGGATGAGGAAACAGCAGCACCTGGAAGGTTTGAGTGCCCAATTGGATGAGCTGAAAAAGGAGAACAATGAGATGAACAGGAACATAGGCATGACGACGCAGGTGTACCTGAAGGTGGAAGCTGAGAACGCGATTCTGAGGGCGCAGATGGCGGAACTCAGCAACAGATTGAACTCTCTGAACGAAATCATCGGTTTCATAAACTCCACGAACTACTTGGTGTTGGATGAAGCACAGGAGACTCAGATGTTCAATGATTGTGGCTTCATGGATGCTTGGAATGGAATACCCTTCAACCAACCAATCATGGCTTCCGCCGACAATGACATCTTAATGATGTATTGA 609 0.4745 MSSPVICEILLSGFTINSSLRRRTHLVQSFSVIHQSIIAQIAPMASPGGACSSGSSSLQNSGSEGDRDMVDQRKRKRMQSNRESARRSRMRKQQHLEGLSAQLDELKKENNEMNRNIGMTTQVYLKVEAENAILRAQMAELSNRLNSLNEIIGFINSTNYLVLDEAQETQMFNDCGFMDAWNGIPFNQPIMASADNDILMMY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03705 202 MobiDBLite consensus disorder prediction 49 65 - -
Vimu11g03705 202 FunFam BZIP transcription factor 71 122 - -
Vimu11g03705 202 Coils Coil 89 151 - -
Vimu11g03705 202 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 76 91 IPR004827 GO:0003700|GO:0006355
Vimu11g03705 202 CDD bZIP_plant_GBF1 74 122 IPR045314 GO:0003700|GO:0006355
Vimu11g03705 202 Gene3D - 71 126 - -
Vimu11g03705 202 SMART brlzneu 69 133 IPR004827 GO:0003700|GO:0006355
Vimu11g03705 202 PANTHER BZIP TRANSCRIPTION FACTOR 44 50 197 - -
Vimu11g03705 202 MobiDBLite consensus disorder prediction 66 94 - -
Vimu11g03705 202 SUPERFAMILY Leucine zipper domain 73 125 IPR046347 GO:0003700|GO:0006355
Vimu11g03705 202 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 71 117 IPR004827 GO:0003700|GO:0006355
Vimu11g03705 202 Pfam bZIP transcription factor 73 120 IPR004827 GO:0003700|GO:0006355
Vimu11g03705 202 MobiDBLite consensus disorder prediction 44 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03705 Vimu-Chr11 59050741 59051493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03705 69 195 bZIP Transcription Factor Family AT4G34590 49.286 1.05e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g03705 bZIP_1 1.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03705 K25786 - gmx:778139 230.72