Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03704 AACATTTTCTTGAAGCTGCATCAACTGAGGGATTCTTCGTCTTTGGATTCGCTTTTGGGGCATCCGAGTCAGAGCTGCAAGGAAAGGGGAGATGCTGGGATGAAAGCTGAATTTTGTGATCAGGGGAAGAGGAAAGATAAAATTGAATCTTTGTCTCCTCTGTGTGTTTATTTGTTGAGAATATATTGTGGTGGTGTTAGTTTGCAGGAAATGGCAACTCTAGTTGAACCACCAAACAGAATTAAGCCAAAGGGAAAGCATTATTATACAATATGGCAAACTTTGTTTGAGATTGATACGAAGTACGTTCCAATCAAGCCTATTGGCCGCGGAGCATATGGCGTGGTGTGCTCTTCCATCAATCGGGAGACCAATGAGAGAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTCTATTGATGCTTTGAGAACTTTACGGGAACTGAAGCTGCTTAGACACATTCGGCATGAAAATGTCATTGCTTTGAAAGATGTCATGATGCCAATCCACAGAACAAGTTTTAAGGATGTCTACTTGGTCTACGAACTCATGGATACCGATCTTCACCAAATTATTAAGTCCTCGCAGCCACTTTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATACCTTCATTCAGCAAATATTCTTCACCGGGATTTGAAGCCTGGGAATCTGCTCATAAATGCCAATTGTGATTTGAAGATATGTGACTTTGGGCTTGCTCGAACTAATGGAGTTGATGGCCAGTTTATGACAGAATATGTTGTCACTCGTTGGTATCGTGCACCGGAGCTCTTGCTATGCTGTGACAACTATGGGACCTCCATTGATGTCTGGTCAGTAGGGTGCATCTTTGCTGAGATTCTTGGTAGAAAACCAATTTTCCCTGGCACTGAGTGTCTCAACCAGCTGAAACTAATTATAAGTGTTCTTGGAAGCCAGCATGAATCTCATATTGAGTTTATTGATAATGCAAAAGCCAGGAGGTTTATCAAATCACTGCCCTATACTAGGGGGAGACACTTCTCTCAGCTATATCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAGATGCTTGTATTTGATCCAACCAAGAGAATTACTGTCTTAGAAGCTCTCCAACATCCATATATGTCTGGCCTGTATGATCCAAGGTGTAACCCTCCTGCACAGGTTCCCATCAATCTTGACATAGATGAACATTGGGGAGAACAGATGATTAGGGAAATGATGTGGAATGAGATGCTACATTATCACCCTGAAGCTGCTTCTGCCAATGCATAG 1317 0.4146 NIFLKLHQLRDSSSLDSLLGHPSQSCKERGDAGMKAEFCDQGKRKDKIESLSPLCVYLLRIYCGGVSLQEMATLVEPPNRIKPKGKHYYTIWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNERVAIKKIGNIFENSIDALRTLRELKLLRHIRHENVIALKDVMMPIHRTSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESHIEFIDNAKARRFIKSLPYTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMSGLYDPRCNPPAQVPINLDIDEHWGEQMIREMMWNEMLHYHPEAASANA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03704 438 ProSiteProfiles Protein kinase domain profile. 102 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03704 438 SMART serkin_6 102 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03704 438 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 101 398 - -
Vimu11g03704 438 Gene3D Phosphorylase Kinase; domain 1 89 425 - -
Vimu11g03704 438 CDD STKc_TEY_MAPK 96 431 - -
Vimu11g03704 438 FunFam Mitogen-activated protein kinase 186 415 - -
Vimu11g03704 438 ProSitePatterns MAP kinase signature. 137 240 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu11g03704 438 SUPERFAMILY Protein kinase-like (PK-like) 94 395 IPR011009 -
Vimu11g03704 438 FunFam Mitogen-activated protein kinase 88 196 - -
Vimu11g03704 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vimu11g03704 438 Pfam Protein kinase domain 103 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03704 438 Gene3D Transferase(Phosphotransferase) domain 1 186 415 - -
Vimu11g03704 438 ProSitePatterns Protein kinases ATP-binding region signature. 108 132 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03704 Vimu-Chr11 59042003 59044254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03704 71 438 MAP Kinase Gene Family AT2G18170 85.326 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu11g03704 Pkinase 2.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03704 K20537 - gmx:100783422 746.888