Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03700 ATGAAGAACAAGAACAAGTTTGTTGGAGTGAGACAAAGGGCTTCTGGGAAATGGGCTGCAGAGATCAAAGACACGTCAAAGAAGATCAGGATGTGGCTTGGTACTTACCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGTCTCCTTAGAGGATCAAACACTCGCACCAATTTCTCTACTCAACCCTGTACCAGCATTGCTACAAATTCTCCTATTTCTCTAAAACTCAGAAATCTTCTTCATCGTAAAGCCATGTCAAATCAAAATCATGTTCAAAACCAGCCCTCTGGTGTAAGTCCATCTTTGCAAGGTGCAGCTACTCCAAATGGTAGTACCATGAATAACATCATGGTCATGGAAGAAACCTCTGGTTTTAGTGGTGAAGGTGATAAGTCTTTGTTTGTGGTTCAGAACCAGGTCTCTGATAACATGTATGGACTTGATATGAATATGATCAATTGTGTGATGGGTATCACACCAGATGCATCTCAGCTTGATTTCTCTTCTTGGTCTTTTGCCCAACAAAGGATTAACGAATTACCATTACCAAAAGATGGATTCGGTGTAGAAAGGCAATTATCAGAATCGGTATATGCAACGAATGAGTGCCAGCATTTCCAGGATACATATGAATATGATGTCAATTATCCTCTCTCTCACTTTTTCTGCTTCACTTGA 690 0.4087 MKNKNKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQPCTSIATNSPISLKLRNLLHRKAMSNQNHVQNQPSGVSPSLQGAATPNGSTMNNIMVMEETSGFSGEGDKSLFVVQNQVSDNMYGLDMNMINCVMGITPDASQLDFSSWSFAQQRINELPLPKDGFGVERQLSESVYATNECQHFQDTYEYDVNYPLSHFFCFT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03700 229 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vimu11g03700 229 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Vimu11g03700 229 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vimu11g03700 229 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vimu11g03700 229 FunFam ethylene-responsive transcription factor RAP2-11 5 64 - -
Vimu11g03700 229 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vimu11g03700 229 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vimu11g03700 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 127 - -
Vimu11g03700 229 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vimu11g03700 229 CDD AP2 6 62 IPR001471 GO:0003700|GO:0006355
Vimu11g03700 229 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03700 Vimu-Chr11 59001089 59001778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03700 3 85 AP2-EREBP Transcription Factor Family AT5G19790 75.904 1.30e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g03700 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03700 K09286 - gmx:100803832 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03700 11 59001089 59001778 Vimu11g03700 11 59001089 59001778 ECH