Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03683 AGCCCTCCGAAAACCCCAAAACCCTGTTTGGCTTTGCGTTTTGTTGTGGCCATGGATTTTCAAGTGGTGGTTCTCGGCGGTGGTGTCTCCAAGAAGCTCCTCCCCCTCGTTTCCCAGGAGCTTCCGAACGCGTTGCTTCCGGTGGCGAATCGCCCCGTTATCTCTTACGTTCTCGAGTACTTGGAGCTTAGCAACCTCAAGGATCTCATTGTGGTGGTTGAAGGCGAAGAAGCGGCTCTTCGTGTCGGGGCTTGGATTTCAGGGGCTTATGCTGATCGCCTCCATGTTGAGGTTGCTGCAGTTCCTGAGGATGTGGGTACAGCAGGTGCAATTCGGGCTATTTCTCATCACCTAACTGCTAAAGACATTTTGGTTGTCAGTGGTGATCTTGTTACGGATGTGCCACTTGGTGCTGTTGCAGCTACTCATAGACGACATGATGCAGTTGTTACTGCTATGCTCTGCTCTGCTCCTGTGATTGGACCTTCAGAGTCAGTATCTTCTGGTGGGAAAGACAAAACCAAGAAACCTGGCCGTTATGATTTGATAGGGCTGGATCCCACAAAGCAGTTTCTAGTTCACATAGCAACTGGAGCAGAAGTTGAGAAGGATCTTCGAATTCAGAAGAGCATACTCCCTGCAGTTGGCCAGATAGAAATAAGAGCTGATCTGATGGATGCCCACTTGTATGCGTTCAAAAGATCAGTTCTACAAGAAGTTCTAGATCAGAAAAGTGCATTTCATAGCTTAAAGCATGATGTATTGCCATATCTAGTCCGGAGCCAACTGAAATCAGAAGTATTATTTAATGGTATGCCACAAGTGGAAGAAAATGGAACTGAAAAGGTTATATCTCAGAGCAATCAACAAATGCTATCTCAAATACTTGCTAATGCATCTGAACCAACCTTTCATCTACGGCATGCACTGGGTTCTTATAGTTCTACTTCTGATCGAAAAACCCACAAATGCTGTGTGTATATTGCTGGAAGCAGCAAGTACTGTGCTCGCTTAAATTCTATACAAGCATACAATGACATAAACCGAGATGTAATAGGAGAGGCTAGCCATTTATCAGGGTATTCTTTCTCTGCCCAAAACAACATTATCCATCCTTCTGCAGAGCTTGGGTCAAAAACAACTGTTGGACCACATTGTATGCTGGGGGAAGGTTCACAGATGGGTGACAAATGCAGTGTGAAACGGTCTGTCATTGGCCGTCATTGTCGAATAGGTGCCAATGTTAAGGTTGTTAATTCAGTAGTTATGAATCATGTTTCTATTGGAGACTGTTGTTCAATCCAAGGTTCTGTTATCTGTAGCAATGTACAGCTCCAAGAACGTGCAGTAGTAAAAGATTGTCAAGTTGGAGCAGGTTATGTGGTCACTGCTGGTAGTGAGTGCAAGGGAGAGGTCTTAGCTAAGAAATGA 1431 0.45 SPPKTPKPCLALRFVVAMDFQVVVLGGGVSKKLLPLVSQELPNALLPVANRPVISYVLEYLELSNLKDLIVVVEGEEAALRVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLGAVAATHRRHDAVVTAMLCSAPVIGPSESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSILPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLFNGMPQVEENGTEKVISQSNQQMLSQILANASEPTFHLRHALGSYSSTSDRKTHKCCVYIAGSSKYCARLNSIQAYNDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVSIGDCCSIQGSVICSNVQLQERAVVKDCQVGAGYVVTAGSECKGEVLAKK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03683 476 Pfam Nucleotidyl transferase 23 155 IPR005835 GO:0009058
Vimu11g03683 476 Gene3D Hexapeptide repeat proteins 363 474 - -
Vimu11g03683 476 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 442 IPR029044 -
Vimu11g03683 476 CDD eIF-2B_gamma_N 20 237 - -
Vimu11g03683 476 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 18 476 - -
Vimu11g03683 476 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 14 362 IPR029044 -
Vimu11g03683 476 CDD LbH_eIF2B_gamma_C 387 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03683 Vimu-Chr11 58835787 58839219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03683 305 467 Eukaryotic Initiation Factors Gene Family AT4G18300 27.222 1.48e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03683 K03241 - gmx:100799460 845.114