Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03679 ATGGATTCGGTGCCTTCGAATTCACATGGAAACCTCGATGAGCAGATTTCTCAGCTCATGCAGTGCAAACCCTTGTCCGAGCAAGAGGTAAGGATCTTGTGTGATAAGGCAAAGGAGATTTTGATGGAAGAGAGCAATGTGCAGCCTGTTAAAAGTCCTGTTACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCAGAGCTTTTTCGCATTGGAGGAAAGTGTCCAGATACAAATTACTTGTTTATGGGAGACTATGTTGACCGTGGCTATTATTCTGTGGAAACTGTTACGCTTTTGGTTGCCCTTAAAGTGCGTTATCGTCAACGTATCACCATTCTGAGGGGAAATCATGAAAGTCGCCAGATTACTCAAGTTTATGGGTTTTATGATGAGTGCTTACGGAAGTATGGTTCTGCTAATGTTTGGAAGATCTTTACAGACTTGTTTGACTACTTTCCATTGACAGCATTGGTTGAATCTGAAATATTTTGTCTTCATGGTGGATTGTCACCATCTATTGAAACCCTCGATAACATACGTAATTTTGATCGCGTACAAGAAGTTCCTCATGAGGGACCCATGTGTGATCTTCTGTGGTCGGATCCGGATGATCGTTGTGGTTGGGGCATCTCTCCTAGAGGTGCTGGATATACCTTTGGGCAGGACATATCTGAGCAATTTAATCATACCAATAACTTGAAGCTGATTGCTAGAGCTCACCAGCTGGTTATGGAAGGATATAACTGGGGCCATGATCAAAAGGTGGTTACTATCTTTAGTGCACCTAATTACTGTTACCGTTGTGGGAACATGGCATCAATTCTCGAGGTTGATGACTGCAAAGGACACACATTCATTCAGTTTGAACCAGCTCCAAGGAGGGGAGAGCCAGATGTAACCAGGAGAACGCCTGACTATTTCCTATGA 936 0.4306 MDSVPSNSHGNLDEQISQLMQCKPLSEQEVRILCDKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03679 311 SUPERFAMILY Metallo-dependent phosphatases 10 296 IPR029052 -
Vimu11g03679 311 ProSitePatterns Serine/threonine specific protein phosphatases signature. 116 121 IPR006186 GO:0016787
Vimu11g03679 311 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 11 311 IPR047129 GO:0004722
Vimu11g03679 311 FunFam Serine/threonine-protein phosphatase 5 311 - -
Vimu11g03679 311 Pfam Calcineurin-like phosphoesterase 53 244 IPR004843 GO:0016787
Vimu11g03679 311 CDD MPP_PP2A_PP4_PP6 11 295 - -
Vimu11g03679 311 SMART pp2a_7 25 295 IPR006186 GO:0016787
Vimu11g03679 311 Gene3D - 5 311 IPR029052 -
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 257 273 IPR006186 GO:0016787
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 53 80 IPR006186 GO:0016787
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 115 139 IPR006186 GO:0016787
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 235 255 IPR006186 GO:0016787
Vimu11g03679 311 PRINTS Serine/threonine phosphatase family signature 82 109 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03679 Vimu-Chr11 58763778 58771516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03679 17 241 Calmodulin-binding Proteins AT5G63870 33.708 1.14e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03679 K04382 - gmx:100798408 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03679 11 58763778 58771516 Vimu11g03679 11 58763778 58771516 ECH
Vimu6g02941 6 25959348 25961058 Vimu11g03679 11 58763778 58771516 ECH
Vimu3g00309 3 2909863 2913213 Vimu11g03679 11 58763778 58771516 ECH