Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03677 TTGACTATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATTCGGGTCCCGCTTTTTCTGCTAACAATGTGGGAACTGGTAGTACTGTAGCTCCTTCACGACCAGTTTATGTTCCTCCTCATCTTAGGAACCGCCAGCCATCAGCGGAAGCCCCGGCTCCAGCCCCAGCCCCAGCATACAGTGGTCCTTCTTCTGGTTCTTCTGGCTCTAGTGCTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAACGATCATCGTTCTGGGTATGGTGGTGGTGGTGGACGCCCAGGTGGATGGGGAAATAGAAGTGGTGGGTGGGATCGTGGCAGGGAAGTCAACCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTAATGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCGGTGGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGATGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGGTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGTACTGTGTATCCACTTGCGCTTGTTCTCTCTCCAACAAGGGAGCTATCGATGCAAATACATGAAGAGGCTAGGAAGTTTTCATTCCAAACTGGTGTTAAGGTGGTTGTTGCTTATGGTGGAGCACCAATAAATCAGCAGTACTTGCTCGGTGCCCTCTTCCCTTTTGATCTGGTTATGAAAGGGGTTGTGGATAATGTGTTTAGTGGCCACAAGGCTGCTCTTGGGACAACACAACTTTGGCAGCTCTTTGTTAAGTTGGTCCTTGCTGGATGCTGTCGGTCAAGCAGTGAAATTTTGTTACATCCTTTTAGAGCTTTATTGGATATGCATGAATTCATTCTTCCAATAATTTTGCAGTTTTGTGCTTCAGAAGCTTTTGCATGTCTGCGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTTAGACAGACTATGTTGTTCAGTGCAACATTTCCGAAAGAGATACAGGATTTCTTCCCCACTTCCTTTGTTTCCCCCTTGTCTTTAGGGCCTGCATACAGGCTCCTTTTAAAGCTGGCTATACACCCCTGTGTTAGGGCAGCAAGTTTCACCTTTCAGTGTAGGCTTTCAAGACTGGCTTCTGATTTTCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACCGATTTAATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGCGATAGGTCGCAGCAGGAAAGAGAATTAGCATTGAGGTCTTTTAAAAGTGGCAACACCCCCATATTGGTTGCTACCGATGTTGCTGCACGTGGTCTTGATATCCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACATCGGATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCTCTCGGTATGCTGCTCGGTCTTATGGTGGAGGGAGAAACCGCCGATCAGGTGGTCGGTTTGGTAGTCGAGACTTTCGGAGAGAGGGCTCGTTTACCAGGGGTTCTTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGATATGGAGGTTCTGGTGGATATGCTGGAGGGTATGGTCCAGGCGTCACTAGTGCCTGGGACTGA 2226 0.4699 MTMRTSWADLAANSAAENSGPAFSANNVGTGSTVAPSRPVYVPPHLRNRQPSAEAPAPAPAPAYSGPSSGSSGSSAAGNSGSRWPAPRNDHRSGYGGGGGRPGGWGNRSGGWDRGREVNPFEEEDNAEEAFNEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSFQTGVKVVVAYGGAPINQQYLLGALFPFDLVMKGVVDNVFSGHKAALGTTQLWQLFVKLVLAGCCRSSSEILLHPFRALLDMHEFILPIILQFCASEAFACLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQDFFPTSFVSPLSLGPAYRLLLKLAIHPCVRAASFTFQCRLSRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSYGGGRNRRSGGRFGSRDFRREGSFTRGSSDYYSAGNSSGGYGGSGGYAGGYGPGVTSAWD 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03677 741 FunFam ATP-dependent RNA helicase RhlB 502 682 - -
Vimu11g03677 741 Pfam Helicase conserved C-terminal domain 524 639 IPR001650 -
Vimu11g03677 741 Gene3D - 339 459 IPR027417 -
Vimu11g03677 741 MobiDBLite consensus disorder prediction 16 34 - -
Vimu11g03677 741 Pfam DEAD/DEAH box helicase 365 447 IPR011545 GO:0003676|GO:0005524
Vimu11g03677 741 MobiDBLite consensus disorder prediction 16 137 - -
Vimu11g03677 741 Pfam DEAD/DEAH box helicase 185 284 IPR011545 GO:0003676|GO:0005524
Vimu11g03677 741 CDD DEADc_DDX3_DDX4 162 506 IPR044763 GO:0003724|GO:0005524
Vimu11g03677 741 SMART helicmild6 558 639 IPR001650 -
Vimu11g03677 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 656 IPR027417 -
Vimu11g03677 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 284 IPR027417 -
Vimu11g03677 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 459 IPR014001 -
Vimu11g03677 741 Gene3D - 501 682 IPR027417 -
Vimu11g03677 741 CDD SF2_C_DEAD 512 648 - -
Vimu11g03677 741 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 161 189 IPR014014 GO:0003724
Vimu11g03677 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 678 IPR001650 -
Vimu11g03677 741 Gene3D - 112 301 IPR027417 -
Vimu11g03677 741 SMART ultradead3 180 472 IPR014001 -
Vimu11g03677 741 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 371 678 - -
Vimu11g03677 741 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03677 Vimu-Chr11 58719090 58729022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03677 302 671 Eukaryotic Initiation Factors Gene Family AT3G19760 28.232 4.10e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03677 K11594 - gmx:100784557 530.791