Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03649 ATGGTGATGTGTCTAGTGGTAACTACGAGATTTTTGCAAGAAGGAACTCGTGATGTGCATATCTATAAAAGGGTGGTGCATTCTGGTTCTGTTTCGATCTGTCTAGCTGAACTCCTAACACGCACACATGCTCTTGCTAAAAAGGTGAAACGTCCTAAGAAGAATCAGGAGAAAGAGATGACATGGTGCAATGACTCAGATGAGGAGAGGGGAATTGAACTGGTTGCGCCCACTATTACTCCTGCAACTAACAACACTCTTGTTACTGACACAAAACAAACCGAAAATCGCACCATAACTTGCCCCTCATGTGGCCACAACATTGAATTCCAAGATCAGACAGGAATCAATGACTTGCCGGGGTTACCATCTGGTGTGAAATTTGATCCGAATGACCAAGAGATATTAGAGCATTTGGAAGCAAAGGTACTTTCTGATGTTCCCAAGCTCCATCCCCTCATTGATGAGTTCATACCAACGCTTGAAGGGGAGAACGGGATCTGTTATACACACCCAGAAAAGCTTCCAGGTGTAAGCAAAGATGGACAGATCCGACACTTCTTTCATAGGCCGTCGAAAGCATACACAACCGGAACAAGGAAGAGAAGAAAGGTTCACACTGATGAAGAGGGAAGCGAGACAAGGTGGCACAAAACAGGAAAAACCAGACCAGTTTTTGTTGGAGGTGCTGTGAAGGGTTTCAAGAAAATACTGGTCCTGTACACCAACTACGGGAGGCAAAAGAAGCCGGAGAAGACGAACTGGGTGATGCATCAGTACCATCTTGGCAGCAATGAAGAAGAGAAAGATGGAGAATTAGTGGTTTCAAAGGTGTTCTACCAAACACAGCCTCGACAATGTGGTACTTCGATCATAAAGCAGGATCTGTACGATGAAGAAAGATTGACTAACCAGAGTGTTGTCGATGATGATAATATAGTACCTAGAAGTGCAACTCTAATGGACTACTACAACAACCCTTCTTTCATAAATTATGAGCATGTGGGTGGTCGCAATAATAGGGAAACTTCACCTCAACTTATTCCAAATTTGGTTATGCAAGGTGATAGCTCTTCTTTCATTCGCTTAGCAATGGATGCCACCAAAGCCAGGCTCAACACAAAATAG 1128 0.4371 MVMCLVVTTRFLQEGTRDVHIYKRVVHSGSVSICLAELLTRTHALAKKVKRPKKNQEKEMTWCNDSDEERGIELVAPTITPATNNTLVTDTKQTENRTITCPSCGHNIEFQDQTGINDLPGLPSGVKFDPNDQEILEHLEAKVLSDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTSIIKQDLYDEERLTNQSVVDDDNIVPRSATLMDYYNNPSFINYEHVGGRNNRETSPQLIPNLVMQGDSSSFIRLAMDATKARLNTK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03649 375 SUPERFAMILY NAC domain 117 281 IPR036093 GO:0003677|GO:0006355
Vimu11g03649 375 Gene3D NAC domain 131 285 IPR036093 GO:0003677|GO:0006355
Vimu11g03649 375 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 78 315 IPR044799 GO:0003700
Vimu11g03649 375 ProSiteProfiles NAC domain profile. 122 281 IPR003441 GO:0003677|GO:0006355
Vimu11g03649 375 FunFam NAC domain-containing protein 73 131 285 - -
Vimu11g03649 375 Pfam No apical meristem (NAM) protein 123 262 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03649 Vimu-Chr11 58478914 58484180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03649 60 291 NAC Transcription Factor Family AT4G28500 72.103 4.65e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g03649 NAM 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03649 - - vra:106766970 651.744