Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03647 ATGACCCAACCACTCCCCATCGTCGTTTACGTTCTGTTATCGGTAGTAGCTTTCGTATCGTGTCTCAACCAAGAGGGGCTTTACCTTTACCAACTCAAGCACTCTCTCGACGACCCTGATTCCACTCTCTCCTCCTGGAACCAAAGGGACGCCACCCCTTGCAACTGGTATGGTGTAACCTGTGCCGGTGATGCCTCCAACACCACTGTTACACAGTTGGACCTTTCCGACACCAACATCGGAGGCCCATTCCCTGCCAACATCCTCTGTCGTCTCCCCAACCTCCTCTCCATAAACTTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTCTGCCGCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTTCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCAATCCCTGACTCCTTCGGAACCTTCCAGAACCTCCAGGTGCTCTCCCTCGTCTCCAATCTTCTTGAAGGTACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCTGGTCGGATCCCTCCGGAGCTCGGCAACCTCACCAACCTCGAGGTTCTCTGGCTCACCCAATGCAACCTTGTCGGCGTCATTCCGGCCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTCGACCTTGCGCTCAATGACCTCTACGGCTCCATCCCCAGTTCGCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGGGAGTTGCCTCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACGGGGAAGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTCTTAATTTGTACGAAAACCGTTTCGAGGGAGAGTTACCTGCCAGCATTGCGGATTCCGAGAATCTTTACGAACTTCGACTCTTCGGTAACCGCCTCACCGGCAGGTTACCGGAGAATCTCGGTAAGAATTCGCCGCTCCGCTGGCTGGACGTTTCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATAATGGTGTTCTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCTGGGGAGATTCCGGCGAGCTTAGGCACGTGCCAGAGCTTGACACGTGTGAGACTAGGATTTAACCGGTTGTCCGGCGAGGTTCCCGCCGGCATCTGGGGGCTTCCGCACGTGTATCTTCTCGAGCTTGTCGACAACTTGTTTTCGGGTTCCATTGCGAGGACCATTGCGGGTGCCGGGAACTTGTCGCTGTTGATTTTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTACAGTTTTCCGCCAGTGATAATAAGTTCACTGGCTCGCTTCCTGATACCATTGTGAATCTTGGGCAGCTCGGGATTCTCGATTTTCATAATAACAGACTCTCTGGGGAGTTGCCGAAAGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTGGTGGTACGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATCTTTCTAGCAACCGCTTTTCCGGGAAAGTCCCTCACGGGTTGCAGAATCTCAAGCTGAATCAGCTTAACTTGTCTTATAATCGTTTGACTGGTGAACTTCCTCCTCTCTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGAGATTTGAAGGGGTTGTGTGATGGTAGGGGTGAGGCAAAGAATGTAGGTTATGTTTGGCTGCTTCGAGCGATTTTTGTTGTAGCCACTTTGGTTTTCTTTGTAGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCAAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATAGGAAGTGGTTCCTCGGGTAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAATATAGTCAAGCTGTGGTGTTGCTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTCGGGGAGAAAGACGTAGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATCTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTTAACATTGGACTCATGTGCACTAGTCCTCTTCCTATTAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTGGGCACAGATAACCAAACCAAGCCTGCCAAAAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGCTTAA 2730 0.5059 MTQPLPIVVYVLLSVVAFVSCLNQEGLYLYQLKHSLDDPDSTLSSWNQRDATPCNWYGVTCAGDASNTTVTQLDLSDTNIGGPFPANILCRLPNLLSINFFNNSINQTLPLDISLCRSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPASLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGELPRGMGNLTRLRLLDASMNHLTGKIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPENLGKNSPLRWLDVSSNQFWGPIPATLCDNGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNLFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVQFSASDNKFTGSLPDTIVNLGQLGILDFHNNRLSGELPKGIRSWKKLNDLNLANNEIGGTIPDEIGGLSVLNFLDLSSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEAKNVGYVWLLRAIFVVATLVFFVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDVVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTDNQTKPAKKDGKLSPYYYDDASDHGSVA 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03647 909 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vimu11g03647 909 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 188 - -
Vimu11g03647 909 FunFam Leucine-rich receptor-like protein kinase family protein 206 304 - -
Vimu11g03647 909 Gene3D Ribonuclease Inhibitor 384 615 IPR032675 -
Vimu11g03647 909 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vimu11g03647 909 Gene3D Transferase(Phosphotransferase) domain 1 780 885 - -
Vimu11g03647 909 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Vimu11g03647 909 FunFam Receptor-like protein kinase HSL1 670 773 - -
Vimu11g03647 909 MobiDBLite consensus disorder prediction 884 898 - -
Vimu11g03647 909 FunFam Receptor-like protein kinase HSL1 310 617 - -
Vimu11g03647 909 SMART LRR_typ_2 164 188 IPR003591 -
Vimu11g03647 909 SMART LRR_typ_2 261 285 IPR003591 -
Vimu11g03647 909 SMART LRR_typ_2 92 116 IPR003591 -
Vimu11g03647 909 SMART LRR_typ_2 500 524 IPR003591 -
Vimu11g03647 909 SMART LRR_typ_2 548 571 IPR003591 -
Vimu11g03647 909 SMART LRR_typ_2 213 236 IPR003591 -
Vimu11g03647 909 SMART LRR_typ_2 140 163 IPR003591 -
Vimu11g03647 909 Gene3D Phosphorylase Kinase; domain 1 670 773 - -
Vimu11g03647 909 ProSiteProfiles Protein kinase domain profile. 686 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03647 909 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vimu11g03647 909 SUPERFAMILY RNI-like 350 589 - -
Vimu11g03647 909 SUPERFAMILY RNI-like 73 419 - -
Vimu11g03647 909 Pfam Leucine Rich repeat 66 82 IPR001611 GO:0005515
Vimu11g03647 909 Gene3D Ribonuclease Inhibitor 280 383 IPR032675 -
Vimu11g03647 909 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 783 878 - -
Vimu11g03647 909 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515
Vimu11g03647 909 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Vimu11g03647 909 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Vimu11g03647 909 Pfam Protein kinase domain 688 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03647 909 SUPERFAMILY Protein kinase-like (PK-like) 681 880 IPR011009 -
Vimu11g03647 909 MobiDBLite consensus disorder prediction 880 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03647 Vimu-Chr11 58454748 58458180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03647 780 909 Receptor kinase-like Gene Family AT1G28440 73.881 2.66e-58 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu11g03647 Pkinase 1.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03647 - - gmx:100819887 1364.36