Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03645 ATGGAGTCGCGAGTACTGTCACGCGCCGGAGCCTTCTCCTCCCTCGCTCACCTCCGCAAGCCACCGCGGGACGTCGCTGGCGGTGCCTCCTTCGTCACGGTGAAGACCGTGGGGTCCCTCGCGGAAGGTGGGAATCTGATTTGGGGGAGGCAGCTGCGTCCGGAGCTCTGCTCGCCGGCTCTGAAGAAGGAGGCCGTCCTCCTCCGGCCTTGCCTGGCAGCCACCTCCTCCCCGGCCGAGGGTGGTGATTCCGCCGGGGAAAAGGTTGCTCCCGCGGGATTCTTCGACAAATACCCCGCTCTTGTCACAGGGTTTTTCTTCTTCACGTGGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAACTATTTCCCCTATCCGTACTTCGTATCCGTCATCCATTTATTCGTCGGTGTGGTGTACTGTTTGGGGAGCTGGACCGTGGGCCTTCCTAAGCGTGCTCCTATAGACTCCAACCTGCTGAAGTTGCTCATTCCGGTGGCTGTGTGCCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATCCTTGGCCAATCCATTCCCATCACTTTGTGGCTGTCTCTGGCTCCCGTTGTTATTGGTGTGTCCATGGCATCTTTGACCGAGCTCTCATTCAACTGGGTTGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACCTACCGGAGCATCTATTCAAAGAAAGCCATGACGGATATGGACAGTACCAATGTCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGCATACCTCCTGCAGTAATTGTGGAAGGCCCTGCTCTATTGAAGCACGGCTTCAATGATGCTATTGCTAAAGTAGGTTTGGTCAAGTTCGTCTCAGATCTCTTCTGGGTTGGTATGTTTTACCATCTCTACAACCAGGTGGCTACCAACACTCTTGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTCGGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTGGAGTGGCACTCTACTCTCTCATCAAAGCCAGACTGGAGGAAGAGAAACGAGTGAGTCCCTTTTCAATTCTTTTATACCTCATTAAATTGGTTGAAACTTGGAAAGTTATTCTTCATATGCAAGGTTAA 1278 0.4969 MESRVLSRAGAFSSLAHLRKPPRDVAGGASFVTVKTVGSLAEGGNLIWGRQLRPELCSPALKKEAVLLRPCLAATSSPAEGGDSAGEKVAPAGFFDKYPALVTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLGSWTVGLPKRAPIDSNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWVGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPAVIVEGPALLKHGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTAIAIAGVALYSLIKARLEEEKRVSPFSILLYLIKLVETWKVILHMQG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03645 425 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 101 399 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vimu11g03645 425 Pfam Triose-phosphate Transporter family 102 389 IPR004853 -
Vimu11g03645 425 PANTHER SOLUTE CARRIER FAMILY 35 104 396 - -
Vimu11g03645 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 321 391 - -
Vimu11g03645 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 144 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03645 Vimu-Chr11 58409261 58413160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03645 1 402 Antiporters AT5G46110 78.398 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03645 K15283 - gmx:100794336 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03645 11 58409261 58413160 Vimu11g03645 11 58409261 58413160 ECH