Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03643 ATGGAGGGAGACGCTTGTTCTGAGGGAGAGAATAATCGGAAAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAACAGCAATCACGGAATTAGTAGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGGTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGTCGTCCAAGAAAGTGCCACGGAAGGTGGTGGCAGAGCCTTTGCCGGAATCACCCACAGATGACCCCATGCTGGGCCCCCCGGAGCTTGGTAATGAGTACGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCATTGATGGAGAGTAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGAGCACCTTTAGCAGCAGCTACCGAACAGCAGAAGCTACCTAGTTTCACCTATGACAGTAAAATATATGAAAGACATGATAGTAGAGCCAATAAGGCTATGGCAAGGACATTTCGTGACTATCGATCTCTGCCAACCCAGCCTGGCACTAGGTCTGATACTTCTGGACCGTTCAGCAAATCTCATTTACATGATGCAATGGAAGGTCCTGCCAGAAATCTTCATTTGGCCCTTGGAAATGAAACTGTACCTAGAATTCGTCCTAGTCAAGGTCAATTTCGTGCTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCGTATCAGTCTCCTACGCGGGATGATAATGCTGCCCCAATTAGGGAATTGGACCCAGCCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAGTTGTTGTGCCAGAAAATCTCCATGCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATACAATACGGATTGAGAAGAAACGAAAGAGTGATGATGTTCGGGATGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAAGAAAAAGCAAGACGTGAGCAAAAACGCGAAATTGAGCGAAGGGAAAAGTTTTTGTTGAAAGAAAATTTAAGAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCTACTGCTCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGTGTCAAGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGTATATGGTGCTGTTTGCTGAGTCAGAGCTATGGGGATGTACCAATTTCCTCTTACTTAATACTTCTAAATTAAAGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATACATGTTGCCCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGATCAAATCAAAATGGTGCTGCTAATGCTGGAGGTGGTCATCCAGAGATTGTGGAAGGCGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCCGGATATGGACCACAGTTAAAGAAAAGAAGTGCTACCTGTTCATATGCAAATAATAAAGATGAGGGGAAAAGTTGTGAAGATATCATTTCTAAACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCACGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCCCTAGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGATCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCGTCAACATATTGTGTTCGTCAGGCATTTAGAAAGAATCCTGCCGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACTGATGATGTTGAAAGAGAAGAGTCAGAGAGTGACGAAATTGATGAGGACCCTGAAGTTGATGATTTGGTAAATTCGTCAAGTGCAAACAAAACATCTGAACCGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCATTTTCCTGAGAGTTCTTCCAAGAAGGTTGATACTCCAATTGCTGTAACCGGGAAACCTGCTTGTGAAGTTTTGAACGTTGGAAGTCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAATATTCTGACCTCAGTGTAGAGGAGCGTCTAAGTGCCCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCTCAACTGGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTCTCAATGGGAATAAAGTTGAAATACAATATTCTTGTCCCACCGTGGAGGGAAACCAAAGCCCTTCATTGCTTGGTATTAATATTGGCAACAATAGTAATATTGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCCACTCCAGGTGTACAGAGCCTGTCTGTCGAAAAACACTCTTCAGTTCAAGATCTTTGCACTGGCCCAGATAACCCTCAGATTCAGACATTTGCACAGTATTCAAAAAGGTCACGGTCTCAGCTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCCTACAGATCCTTACCCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTCGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCAGGATCTTTGTCGAATTTCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCGCTTCTGAATTCCCTTGATTCGCGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGGGTTCCTTTAAGGAAAATTTTCGTAATAATACACAATGTTCTAAAGCTGGAAGCAGAAGCGAAACGTGTGTTAAAAATGAAGCTGACGAAGCAGACTCCAGTCCTGATCGACATACCGGATCTGACAGTCCCAGTAGTACCCTTTGTGGCCTGAACTCTGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAATTCATCAATATTATGTGCCATGAAATACGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGAGATCTGTCTCAATCCTTATTTCTATGAAGACTCCCATTGCAGTTGTTGCCACCGAACTTTTCCCTCAAATAATGGGTTTAATTTTTCTAAACACGCATTTCAATGTGGAGACAAATTATCAAAAGAGATTTGTGTTTTGGATTCGTCTCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTTATATTGAGGTTTCTATTCCACCCGAAGCATTTCAATCAACTTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTAGAGGAACTGCTACAGATATTGGCCCTACTCGAGAGAGCATTGAAGCGTGACTTTCTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACACTATGTCAGAGAGTGCTGCACAAACCTCTGCTGATCCTGAATCAGTTGCTGTCCTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGACTTTTTGAGTTTGATGAATCAATTGTCTACGTACTGCATGAAAAACCTGAACCTCGTGAGGAGAAAGAAGATAGGCAGTACATAAAGCTTCCTTCAAGACACAATGCTTCCAAATCTATTAAAGTGTCTGAAACAGCAGACATGGGACGTAACGAATTCATGAAAGTTAAATCTAATACTGTGAAGATTGTGCAAAGCAACAATAAACGAGGACGAGGCAGTGCTCTCAAAGGACGGAGTAAAAATATATCTAAAACCAAACAAAATAATGGCCGTCGGCACAGTGCAAAGGTTGCTGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACAAGCTGGTGCACGTGGTCGTCGAACAGTCCGGAAAAGAAGAATGGGGAAAAAGGCTGTTGAAGATCTGTTGCTAGGCCATAGGGGTGCCTCTCGTAGCAACAACATTGCTAGAGAATCATTAAGAAGCTTGGATGAGGATTGGGATGATCAAAAAGGAAGTCCCATGACTCCCATCCATATGGGAACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTACAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTGGAGTCTGATGACAATGGCCAAGCAGTGGAATCTGATGACAACGGTCAAGCAATGGAATCTGATGACAATGGACAAGCAGTAGAATCTGATGACAATGGGCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTAATACCAGCCGATGGCAGGGGGATCTGGTTGGAACAAGTGATGAAGATATTGAAGCTTCTGAAGATGACAATCACAATGACAATGGCATTGAAGAGAATGAAGAAGAGGATTCAGAGGGAGATGTTATGAGCGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAGAAAGCTCAGATTCGGATGTCTCTGAAGATTCTTCTGATTAG 5391 0.4305 MEGDACSEGENNRKRGGTDDDSNENNNNNSNHGISSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLSSKKVPRKVVAEPLPESPTDDPMLGPPELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRALMESRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAAATEQQKLPSFTYDSKIYERHDSRANKAMARTFRDYRSLPTQPGTRSDTSGPFSKSHLHDAMEGPARNLHLALGNETVPRIRPSQGQFRARLLSQQDKQLIPYQSPTRDDNAAPIRELDPAILNVGTSSHFADHQVVVPENLHAQPSGQVLHNNNTIRIEKKRKSDDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEEKARREQKREIERREKFLLKENLRAEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGVKLRKPFAIKPWINSEKNVGNLLMYMVLFAESELWGCTNFLLLNTSKLKVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGSNQNGAANAGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSATCSYANNKDEGKSCEDIISKLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNSSSANKTSEPCDDFSSNGKENLGHDVGLQGEFDKDLPHFPESSSKKVDTPIAVTGKPACEVLNVGSLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLSALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSLNGNKVEIQYSCPTVEGNQSPSLLGINIGNNSNIVPSPSTAENQKATPGVQSLSVEKHSSVQDLCTGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLNSLDSRGVRESHLRLMLQKVEGSFKENFRNNTQCSKAGSRSETCVKNEADEADSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRCKPQVVVCEICLNPYFYEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKEICVLDSSLPLRTRLLKALLAYIEVSIPPEAFQSTWIEDIRRHWSVKLSKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPREEKEDRQYIKLPSRHNASKSIKVSETADMGRNEFMKVKSNTVKIVQSNNKRGRGSALKGRSKNISKTKQNNGRRHSAKVAGNLNQRVKQQGGGSQGQAGARGRRTVRKRRMGKKAVEDLLLGHRGASRSNNIARESLRSLDEDWDDQKGSPMTPIHMGTANISNSTEEAESDDNVQAMESDDNVQAVESDDNGQAVESDDNGQAMESDDNGQAVESDDNGQAVEYDQGNWEIGFNGNTSRWQGDLVGTSDEDIEASEDDNHNDNGIEENEEEDSEGDVMSEGSDGTANRIVNEEESSDSDVSEDSSD 1796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1739 1768 - -
Vimu11g03643 1796 CDD homeodomain 49 98 IPR001356 GO:0003677
Vimu11g03643 1796 ProSiteProfiles DDT domain profile. 555 614 IPR018501 -
Vimu11g03643 1796 SMART testlast3 553 614 IPR018501 -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1619 1707 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1667 1706 - -
Vimu11g03643 1796 SMART HOX_1 46 108 IPR001356 GO:0003677
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 834 882 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1536 1605 - -
Vimu11g03643 1796 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1217 1232 - -
Vimu11g03643 1796 Coils Coil 455 486 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1624 1638 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 105 147 - -
Vimu11g03643 1796 Pfam HB1, ASXL, restriction endonuclease HTH domain 737 805 IPR007759 GO:0006355
Vimu11g03643 1796 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1122 1194 IPR028941 -
Vimu11g03643 1796 SUPERFAMILY Homeodomain-like 35 103 IPR009057 -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1720 1734 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1 57 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1536 1555 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1233 1249 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1643 1660 - -
Vimu11g03643 1796 Coils Coil 384 449 - -
Vimu11g03643 1796 Gene3D - 32 106 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 22 53 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1563 1585 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1719 1796 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 1213 1249 - -
Vimu11g03643 1796 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 942 984 IPR028942 -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 401 442 - -
Vimu11g03643 1796 Pfam DDT domain 562 611 IPR018501 -
Vimu11g03643 1796 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Vimu11g03643 1796 ProSiteProfiles HARE-type HTH domain profile. 737 806 IPR007759 GO:0006355
Vimu11g03643 1796 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 35 515 IPR044977 GO:0006357
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 860 877 - -
Vimu11g03643 1796 MobiDBLite consensus disorder prediction 834 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03643 Vimu-Chr11 58388387 58397786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03643 40 1726 Homeobox Transcription Factor Family AT1G28420 45.852 0.0 1224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu11g03643 WSD 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03643 - - gmx:100784945 2610.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03643 11 58388387 58397786 Vimu11g03643 11 58388387 58397786 ECH
Vimu11g03643 11 58388387 58397786 Vimu2g00697 2 4210253 4220125 PCT