Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03640 ATGGATTCTGACTTCTGGACCTCGCGTCTTGCCGCCGCTAAACGCCAATACACGCTTCAGCATCACCATCAGAATTCTCATTTAGATCGGTTGGGAATCGATGATTTTGATGTGGAAGAAGAGGTGCGACCTGATTTCCCTTGCCCCTATTGCTATGAAGACTTTGACATCGCGTCTTTGTGTTCTCATCTTGAAGACGAACATTCTTGCGAAGCGAGAGTCACGTTTGCTGTTATCCTTGTCGCCTTTTGTTCCTTGCCCTTTGTTGGTACATTTTGCAAGAAGCTCAGTCTTGGTTTTTCTGGGATGCAGATTTGTCCTGTATGCTCTGTTAAAGTTGCAAGGGACATGTTAAGTCACATAACGCTGCAACACGGGCACTTATTCAAGATATCCTTTGTACCGATGTTAAGAAGAGTTGCAATTCCAAACAGTCAGACATTGTCTCTCTTGGGTCGAGATCTTCGTGAGGCTCATCTACAGGTGCTTCTTGGTGGTGCTGGCGGAGGATACCGGTCAAACAGTGCAGCTGTGTCTAATGTTGCAACTGATCCCTTTCTATCCTCATTTATTTTGAATTTCCCAGCCTGTGAAGCAGAAGAGATTTCAAAATCTGTGGTAACAACTGCTGAGGATTCTTCTGCAAAAAATGTGACACCTGAACATATTTGGAAATCAAGTTTTGATCCCTCCTTGAGCAGCGAAGAGCGGGAGGAAAGGATGAGACAAGCTGCTGGGAGATCTGGTTTTGTGCAGGACTTGTTTCTTTCAACTTTGTTAGGCGACTAA 789 0.4487 MDSDFWTSRLAAAKRQYTLQHHHQNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIASLCSHLEDEHSCEARVTFAVILVAFCSLPFVGTFCKKLSLGFSGMQICPVCSVKVARDMLSHITLQHGHLFKISFVPMLRRVAIPNSQTLSLLGRDLREAHLQVLLGGAGGGYRSNSAAVSNVATDPFLSSFILNFPACEAEEISKSVVTTAEDSSAKNVTPEHIWKSSFDPSLSSEEREERMRQAAGRSGFVQDLFLSTLLGD 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03640 262 PANTHER PROTEIN DEHYDRATION-INDUCED 19 32 260 IPR033347 -
Vimu11g03640 262 Pfam Stress-induced protein Di19, C-terminal 148 259 IPR027935 -
Vimu11g03640 262 Pfam Drought induced 19 protein (Di19), zinc-binding 45 73 IPR008598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03640 Vimu-Chr11 58320297 58322827 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g03640 Di19_C 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03640 - - gmx:100792230 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03640 11 58320297 58322827 Vimu11g03640 11 58320297 58322827 ECH