Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03630 ATGTGTTTGGTTTTGAGGAGCAGATACTCCGTGTTCGTGTCCGGTTTGCTGGAGCGTCCCAAACAGCTCATGATGAAAGATATTTGGTTATTGAGTAAGTTGGATTTTGTTAATTACTTCATTGACTATCTATTTGAATCTAGTAAGGCCAATGAATTGAAAGCAAAATTATTGTCATCCTTAAAAACTCTTTATGAACAATATCAAGGTATTGAGGAGGGTTCTCAAAGTAGCCAACAAGAATCTCAACTAGATGATGATGATGATGATCCTCATGGCATGCGTTTCTACCTAAGAGCGGTGATAGCCAACAGATTTTGGGAAGTTGTTGGGAATCTCATTAGTTGCCGAAGAAGACCCATGCCAAACGATGCCGTGTCAACATGGTTTGCTTCGATTCGCGGTCTCAACTCGTCCACGTGTCACAATATGATTGAACAAGATACCGTTGCGGTGACGAAACAACGGGTGATGCAAATCTTCGTTAAGACTCTCACCGGTAAGACCATCACTCTCGAAGTAGAGAGCTCAGATACCATTGATAATGTGAAAGCCAAGATTCAAGATAAGGAAGGAATCCCACCGGACCAGCAACGTCTCATTTTTGCTGGCAAACAGCTTGAGGATGGTCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTCCGTGGTGGAATGCAAATCTTTGTGAAGACGTTGACAGGAAAGACAATCACCCTTGAGGTAGAGAGCTCCGACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCTTGGCTGATTACAACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACTATAGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATAACATTCAGAAAGAGTCAACTCTCCATCTTGTCTTGCGACTCCGTGGTGGTATGCAGATTTTCGTCAAGACCCTTACTGGAAAAACAATTACTTTGGAGGTGGAGAGTTCAGACACGATTGACAATGTCAAGGCCAAGATACAGGACAAGGAGGGCATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACTCTGGCTGATTACAACATTCAGAAAGAGTCCACTCTTCATCTTGTACTTCGTCTGAGGGGAGGCATGCAGATATTCGTGAAAACTTTAACAGGGAAGACTATCACTTTGGAGGTTGAAAGCTCAGATACAATTGATAACGTGAAGGCAAAAATTCAGGACAAGGAAGGAATCCCACCTGATCAGCAGAGGTTGATCTTCGCAGGGAAGCAATTGGAGGATGGCAGGACTCTTGCTGATTACAACATTCAGAAAGAGTCCACCCTTCACCTGGTATTGCGTCTTCGTGGTGGGTTTTAA 1617 0.4515 MCLVLRSRYSVFVSGLLERPKQLMMKDIWLLSKLDFVNYFIDYLFESSKANELKAKLLSSLKTLYEQYQGIEEGSQSSQQESQLDDDDDDPHGMRFYLRAVIANRFWEVVGNLISCRRRPMPNDAVSTWFASIRGLNSSTCHNMIEQDTVAVTKQRVMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03630 538 ProSitePatterns Ubiquitin domain signature. 488 513 IPR019954 -
Vimu11g03630 538 SUPERFAMILY Ubiquitin-like 233 309 IPR029071 -
Vimu11g03630 538 CDD Ubl_ubiquitin 310 385 - -
Vimu11g03630 538 FunFam Polyubiquitin 3 462 537 - -
Vimu11g03630 538 SUPERFAMILY Ubiquitin-like 385 461 IPR029071 -
Vimu11g03630 538 ProSitePatterns Ubiquitin domain signature. 336 361 IPR019954 -
Vimu11g03630 538 CDD Ubl_ubiquitin 462 537 - -
Vimu11g03630 538 CDD Ubl_ubiquitin 158 233 - -
Vimu11g03630 538 ProSitePatterns Ubiquitin domain signature. 184 209 IPR019954 -
Vimu11g03630 538 PRINTS Ubiquitin signature 210 231 IPR019956 -
Vimu11g03630 538 PRINTS Ubiquitin signature 168 188 IPR019956 -
Vimu11g03630 538 PRINTS Ubiquitin signature 189 209 IPR019956 -
Vimu11g03630 538 FunFam Polyubiquitin 3 386 461 - -
Vimu11g03630 538 ProSiteProfiles Ubiquitin domain profile. 386 461 IPR000626 GO:0005515
Vimu11g03630 538 ProSiteProfiles Ubiquitin domain profile. 310 385 IPR000626 GO:0005515
Vimu11g03630 538 FunFam Polyubiquitin 3 310 385 - -
Vimu11g03630 538 ProSitePatterns Ubiquitin domain signature. 412 437 IPR019954 -
Vimu11g03630 538 Pfam Ubiquitin family 312 383 IPR000626 GO:0005515
Vimu11g03630 538 Pfam Ubiquitin family 464 535 IPR000626 GO:0005515
Vimu11g03630 538 Pfam Ubiquitin family 236 307 IPR000626 GO:0005515
Vimu11g03630 538 Pfam Ubiquitin family 388 459 IPR000626 GO:0005515
Vimu11g03630 538 Pfam Ubiquitin family 160 231 IPR000626 GO:0005515
Vimu11g03630 538 SUPERFAMILY Ubiquitin-like 309 385 IPR029071 -
Vimu11g03630 538 Gene3D - 462 538 - -
Vimu11g03630 538 Gene3D - 386 461 - -
Vimu11g03630 538 Gene3D - 151 233 - -
Vimu11g03630 538 Gene3D - 234 309 - -
Vimu11g03630 538 Gene3D - 310 385 - -
Vimu11g03630 538 ProSiteProfiles Ubiquitin domain profile. 462 537 IPR000626 GO:0005515
Vimu11g03630 538 CDD Ubl_ubiquitin 386 461 - -
Vimu11g03630 538 CDD Ubl_ubiquitin 234 309 - -
Vimu11g03630 538 FunFam Polyubiquitin 3 234 309 - -
Vimu11g03630 538 ProSitePatterns Ubiquitin domain signature. 260 285 IPR019954 -
Vimu11g03630 538 FunFam Polyubiquitin 3 158 233 - -
Vimu11g03630 538 SMART ubq_7 310 381 IPR000626 GO:0005515
Vimu11g03630 538 SMART ubq_7 386 457 IPR000626 GO:0005515
Vimu11g03630 538 SMART ubq_7 462 533 IPR000626 GO:0005515
Vimu11g03630 538 SMART ubq_7 158 229 IPR000626 GO:0005515
Vimu11g03630 538 SMART ubq_7 234 305 IPR000626 GO:0005515
Vimu11g03630 538 PANTHER UBIQUITIN 310 387 - -
Vimu11g03630 538 SUPERFAMILY Ubiquitin-like 150 233 IPR029071 -
Vimu11g03630 538 ProSiteProfiles Ubiquitin domain profile. 234 309 IPR000626 GO:0005515
Vimu11g03630 538 SUPERFAMILY Ubiquitin-like 461 537 IPR029071 -
Vimu11g03630 538 ProSiteProfiles Ubiquitin domain profile. 158 233 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03630 Vimu-Chr11 58254460 58260386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03630 462 538 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.88e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03630 K08770 - zof:122015560 736.873