Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03624 ATGAAGAACTCGACAAGAAAGTTGAGTGGCATGGATAGGTCAGCAAGAAAATCGAATGGGTTGGAGTGGTCGATAAGATGTATGGAAATAGACTACTCAGATATAAGCGAGGATCTTCAGTGTCCTATCTGCCTAGGTGTAATTCGAAAAACCAAAATTGTTATGGAATGCTTGCATCGGTTTTGCGGAGAATGCATTGAGAAATCCATTCGACTTTGTAAGAATGAATGCCCAGTTTGTCGTGAACATTATCCTGGCGGATGCACATTAGGGGATGATCGCCACTATGATCATCTCATTTCTATCATCCATCCTGATATTGAACAGTACGAGGAGGAGTGTTTCCGACGTCAAATGAAAGAATTGGAGAGGAAACAGAAGGCCAGGGCAACCGCTGCAGGTTTTGCAAGGAGACGCAGAACAATCAGAAATGCATGTGAAGATCAGAAATCCAATGACAATGAGGTTATTAATGATAAGAATGGAGGAAAAGACTGA 498 0.4197 MKNSTRKLSGMDRSARKSNGLEWSIRCMEIDYSDISEDLQCPICLGVIRKTKIVMECLHRFCGECIEKSIRLCKNECPVCREHYPGGCTLGDDRHYDHLISIIHPDIEQYEEECFRRQMKELERKQKARATAAGFARRRRTIRNACEDQKSNDNEVINDKNGGKD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03624 165 PANTHER OS11G0578200 PROTEIN 20 139 IPR044592 -
Vimu11g03624 165 Pfam Zinc finger, C3HC4 type (RING finger) 40 80 - -
Vimu11g03624 165 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Vimu11g03624 165 SMART ring_2 41 80 IPR001841 -
Vimu11g03624 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 134 IPR013083 -
Vimu11g03624 165 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Vimu11g03624 165 SUPERFAMILY RING/U-box 30 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03624 Vimu-Chr11 58175805 58180942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03624 37 81 RAD5 or RAD16-like Gene Family AT5G05130 40.000 8.25e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03624 K10695 - jre:108984181 142.895