Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03623 TTGTTGAACTCTTCACTTTGCCAGCTTCATTACACAGGATTTGGTTTCAGTGAAAACAGAATGTCAGCACAGAAACGCCCACAAGAGCAACCCCAAGATGAAGCTGAATCTGAGCAAAACGGTTCCTTGAGCAACCTGGACAAAGACAAGGAGTACATGGCTATGGATTTGTCAATTTTGAAGTGTGGTATCTGCCGAGGATTCATTCAGAACACAAGAACGCTGATGGAATGCTTTCATAAGTTTTGCCAAGAATGCATTGAGAAATACATGCGCCTTGGAGTCAATGAGTGTCCTGTTTGTCATGTTCATGTTGCTAGTCAATTGTCACTGAAAGAAGATCCACAATACGATGCTATAGTTTCTGCTATAGTGCCACAGGTTATGAAGTACAAGAAAAAGGCAAGTTTTCAACAGAGTTACACCTGTGTTAGTGGCGACAAGGCTATGAGTAATCGTCTCTCCAAGCTTATTGATCTTCTACGTAAGTCTGATGAGAAGGTTGACGAGTTGGAGATTCACCTTGTGCTTATTTCTTTGGATGAGCAAAGGATACCGAGTTTGCAGGAACCACATCTTTTATGCAGGCCTACTTGCTCAGTGAAGACACTGTGCAAGTATGTTGAACTCAAAGCTAAGCTGCAGGAGAATCAAGTTGAATTATTCTTGATAGAAGAATCAGAAGCAAACATTGTAATGGGTGACATAACAATTGATCCAAACAAGGACAAATTGCGTGTTCTGCGAGATGAAGAAACTTTGGCTCAACTGTACACTCCGAATGTCACCAACTGTGGTCATCTGCTCCTGGCTTATAAGATGAAGTAG 828 0.4167 MLNSSLCQLHYTGFGFSENRMSAQKRPQEQPQDEAESEQNGSLSNLDKDKEYMAMDLSILKCGICRGFIQNTRTLMECFHKFCQECIEKYMRLGVNECPVCHVHVASQLSLKEDPQYDAIVSAIVPQVMKYKKKASFQQSYTCVSGDKAMSNRLSKLIDLLRKSDEKVDELEIHLVLISLDEQRIPSLQEPHLLCRPTCSVKTLCKYVELKAKLQENQVELFLIEESEANIVMGDITIDPNKDKLRVLRDEETLAQLYTPNVTNCGHLLLAYKMK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03623 275 SMART ring_2 62 101 IPR001841 -
Vimu11g03623 275 SUPERFAMILY RING/U-box 61 111 - -
Vimu11g03623 275 MobiDBLite consensus disorder prediction 20 45 - -
Vimu11g03623 275 ProSitePatterns Zinc finger RING-type signature. 78 87 IPR017907 -
Vimu11g03623 275 Pfam Zinc finger, C3HC4 type (RING finger) 61 101 - -
Vimu11g03623 275 PANTHER OS11G0578200 PROTEIN 25 134 IPR044592 -
Vimu11g03623 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 132 IPR013083 -
Vimu11g03623 275 ProSiteProfiles Zinc finger RING-type profile. 62 102 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03623 Vimu-Chr11 58166378 58170882 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03623 60 106 C3H Transcription Factor Family AT3G23060 41.667 2.63e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03623 K10695 - cit:102616925 130.568