Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03620 ATGGAGGAGATTTCAAGTTCAGGGTACAAGGAATATGTTGCTGGCTGTCTCGCTGGTGTTGCCGCTGTAGCCTCTGGCCACCCCTTTGACACCGTCAAGATAATGATAGTTAGGATCCCCATGAGGGGCGAAAATGAACTTAACTTTCCCTCTCCGCCTCTCTTGCTTGCTCTGTATGTGATGCTGCAAAAGCACAATGCAGAAGCACATATGATTCAGTACAGAAATGGATTACATTGCACTGCTAGGATATTAAAGACAGAAGGAATCAAAGGACTTTATAGAGGAGCAACATCATCTTTTGTTGGGATGGCAGTAGAAGGATCACTATTTTTTGGTATTTATTCCCAGACAAAAATGTACCTTCAGGGGGGAGTTCAAAGTGGGGAACCACGGCCGCAAGTAATAATACCGTCTGCAGCTTATAGTGGTGCCATCATCAGTTTTGTGTTAGGTCCAACAGAGCTGATAAAGTGTAGGATGCAGATACAAGGCACCGACTCTTTGGTTCCCAAGTCCAGTATATACAGTAGTCCCCTTGATTGTGCTCTTAAAACAGTAGAAACTGAAGGGGTGAAAGGAGTTTTTCGTGGAGGTTGTACAACATTGCTTAGAGAATCTATAGGGAATGCTGTCTTTATGAGTGTTTACGAATATGTGCGTCATCAGATGCATTCAAATATCAAAGTTTCTTCATCCAATTACAGCAACCTGGTTGATATTGGAATTGGAATTGCTGCTGGTGGTCTTGGTGGTGTTGGTTTTTGGTTGACGGTTTTACCTCTTGACGTGGCAAAGACTTTAATTCAGACAAACCCTGACAAAAACTGTCCAAGAAATCCTTTTCGGGTCTTGAGTTCAGTCTACCAAAGGGCTGGATTGAAGGGGTGCTATGCAGGTTTAGGTCCTACTATAAGTCGAGCATTTCCTGCTAATGCTGCAACAATTGTCGCGTGGGAGTTAGCTTTGAAAATGCTAATCTACCAAATTGCTGATCATACGGCAAAGCTCAGGACATCATTCAGCATTGCATTTGAAGCCGCTTATTTAATTCTTTTTTATAAGAGAGCTTGTTTAAAGAACTTGGAACCAGGGGCCTTGATTTTAGCTGTCCTCTCCATGATTTTTACCCTCCAATTTTTTGGATAG 1149 0.4256 MEEISSSGYKEYVAGCLAGVAAVASGHPFDTVKIMIVRIPMRGENELNFPSPPLLLALYVMLQKHNAEAHMIQYRNGLHCTARILKTEGIKGLYRGATSSFVGMAVEGSLFFGIYSQTKMYLQGGVQSGEPRPQVIIPSAAYSGAIISFVLGPTELIKCRMQIQGTDSLVPKSSIYSSPLDCALKTVETEGVKGVFRGGCTTLLRESIGNAVFMSVYEYVRHQMHSNIKVSSSNYSNLVDIGIGIAAGGLGGVGFWLTVLPLDVAKTLIQTNPDKNCPRNPFRVLSSVYQRAGLKGCYAGLGPTISRAFPANAATIVAWELALKMLIYQIADHTAKLRTSFSIAFEAAYLILFYKRACLKNLEPGALILAVLSMIFTLQFFG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03620 382 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 121 IPR018108 -
Vimu11g03620 382 FunFam Mitochondrial amino acid carrier 206 330 - -
Vimu11g03620 382 Gene3D Mitochondrial carrier domain 2 138 IPR023395 -
Vimu11g03620 382 Pfam Mitochondrial carrier protein 245 326 IPR018108 -
Vimu11g03620 382 Pfam Mitochondrial carrier protein 9 123 IPR018108 -
Vimu11g03620 382 Pfam Mitochondrial carrier protein 139 224 IPR018108 -
Vimu11g03620 382 ProSiteProfiles Solute carrier (Solcar) repeat profile. 239 325 IPR018108 -
Vimu11g03620 382 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 326 - -
Vimu11g03620 382 Gene3D Mitochondrial carrier domain 139 354 IPR023395 -
Vimu11g03620 382 SUPERFAMILY Mitochondrial carrier 9 320 IPR023395 -
Vimu11g03620 382 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 223 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03620 Vimu-Chr11 58119213 58128427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03620 83 329 Antiporters AT1G79900 31.225 2.93e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03620 K15109 - gmx:100815087 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03620 11 58119213 58128427 Vimu11g03620 11 58119213 58128427 ECH