Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03615 TTGCTTCTGTTTTCAATTTTTCCATATCTTCTTCCCTCTCTAAAACGGTTAATTTTTCTACAGTTTAACATAGCAAATCCCACCACTGGATGTCAGAAGAAGCTGGAAATCGATGACGACCAGAAGCTTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGATGCCTTGGGCGAGGAATTTAAAGGCTATGTTTTTAAAATCACTGGAGGGTGTGACAAACAAGGCTTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTCCGACTCTTGCTCCATAGAGGAACCCCATGTTTCCGTGGATATGGGAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGATGCATTGTTAGCCCTGACCTATCTGTTTTGAACTTAGTTATTGTGAAGAAGGGGGATAGTGATTTGCCAGGTCTCACTGACGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCAAAAATCCGAAAGCTGTTCAACCTGTCAAAGGATGATGATGTGAGAAAGTATGTAAACACATACCGTCGGACCTTTACAACAAAAGCTGGGAAAAAAGTGAGCAAAGCTCCCAAGATTCAACGATTGGTCACTCCTTTGACTCTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAAAGAATTGCTAAGGCAAAGTCAGAAGCAGCAGAGTATCAGAAACTCCTTGCTTCTAGATTGAAGGAGCAGAGGGATCGCCGGAGTGAAAGCTTGGCTAAGCGTAGATCCAAACTTTCTAGTGCTTCCAAACCCACTGTTACTGCATAG 807 0.4548 MLLFSIFPYLLPSLKRLIFLQFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDSDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSASKPTVTA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03615 268 ProSitePatterns Ribosomal protein S6e signature. 71 82 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vimu11g03615 268 PANTHER 40S RIBOSOMAL PROTEIN S6 21 259 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu11g03615 268 Pfam Ribosomal protein S6e 21 147 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu11g03615 268 PIRSF RPS6e 20 268 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vimu11g03615 268 MobiDBLite consensus disorder prediction 237 268 - -
Vimu11g03615 268 Coils Coil 208 235 - -
Vimu11g03615 268 Gene3D - 152 253 - -
Vimu11g03615 268 SMART Ribosomal_S6e_2 20 147 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vimu11g03615 268 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03615 Vimu-Chr11 58021025 58023107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03615 20 268 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.486 1.50e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03615 K02991 - gmx:100786559 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03615 11 58021025 58023107 Vimu2g00671 2 4006085 4017772 PCT