Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03614 ATGGACAAATTTCCTGTGCCATTTTCAGCAGCCACCACCAACAAATCAATCCCCAATGTCTCTGGCACTACCTCTTTTTCTTCGAACATAATAATCCCAGCTCAACAAAACATGGCAGAACTAACAAATTTTAACTTCCCTGTTGACAAAACTGGACAAGTTGGCTTTCCTGAACCTTATTTCGGTCCGTATGATCAAAACATGCACTTCCAACAAATGAATCCATATCCTTTGCATATCCTTCCAAGACGACAACCAAATGCAATTTATGCACCACCAAATTCTGAAGTTAAAACCTCTGTGGGACCATTGACTAGCAAAGTTGCTAGGGAGAAAAGGAAAAAAGTAAGACATAAGAGTAAGAGTGTTGCTCCTACGGCTCCTTCGGTTCCAACCAAAGGAACAAAGGAAAAACCTGGTTCTGGACGAGGAAAACTCACTGCCAACCAAGATAAAACTGTTACTGTTTTTTGCAGCCCAGATGGGAAGAAGTTAGAGGAAGTTTTCACAAAGCAGTTGAGGAATAGTGACGTTAGTTCCCTAGGTCGCATTGTGCTCCCAAAGAGGGACGTTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATCACAGTCAAGGATGTTTATTCTGAGAAGATATGGACCTTGAAATACAAGTATTGGTCTAATAACAGAAGTAGAATGTATGTTCTTGAAAATGCAGGGGATCTAGTGAACCATTATGAACTACGACTGGGCGATTATATAACCATTTTCACGGACGAAATGAAAAATCTGAGGAAGCAGTATGTGTTGGCTAGAAAAATGAGAAATCTAGAAGCACCAGTGTGCTCGTCAATCATGGAAAGCTCGAAAACATGCGAGACAGACAACCTTAACGACATGAACCGCAAGAAAGACGTTGAAGAAGCTAACAAGCTTTTGACTTCATTCAATGGTGGCGGAAGTTCTTCAAGTGGAGCAAAGTCAGATATGAATATAGCACAGCATGATCAGTTGTCGAACACTGCTGGGAAAGGGGAACCAAACCAAACAACTGCAGAAGCCACACCACCAGCATCAACAACACCCCTTGATGGCAATAACATACCGATAAGTGATGAAGACGTGTATGGGGGCCTTGACACTATCTTCGAAATTGAGAATAGTTCATGGTTTTGA 1170 0.4197 MDKFPVPFSAATTNKSIPNVSGTTSFSSNIIIPAQQNMAELTNFNFPVDKTGQVGFPEPYFGPYDQNMHFQQMNPYPLHILPRRQPNAIYAPPNSEVKTSVGPLTSKVAREKRKKVRHKSKSVAPTAPSVPTKGTKEKPGSGRGKLTANQDKTVTVFCSPDGKKLEEVFTKQLRNSDVSSLGRIVLPKRDVEAKLPPLTDKEGKDITVKDVYSEKIWTLKYKYWSNNRSRMYVLENAGDLVNHYELRLGDYITIFTDEMKNLRKQYVLARKMRNLEAPVCSSIMESSKTCETDNLNDMNRKKDVEEANKLLTSFNGGGSSSSGAKSDMNIAQHDQLSNTAGKGEPNQTTAEATPPASTTPLDGNNIPISDEDVYGGLDTIFEIENSSWF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03614 389 Gene3D - 158 274 IPR015300 -
Vimu11g03614 389 Pfam B3 DNA binding domain 169 255 IPR003340 GO:0003677
Vimu11g03614 389 SUPERFAMILY DNA-binding pseudobarrel domain 168 263 IPR015300 -
Vimu11g03614 389 SMART B3_2 169 265 IPR003340 GO:0003677
Vimu11g03614 389 ProSiteProfiles B3 DNA-binding domain profile. 169 272 IPR003340 GO:0003677
Vimu11g03614 389 MobiDBLite consensus disorder prediction 110 148 - -
Vimu11g03614 389 CDD B3_DNA 169 254 IPR003340 GO:0003677
Vimu11g03614 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 118 277 IPR044800 GO:0003700
Vimu11g03614 389 MobiDBLite consensus disorder prediction 337 365 - -
Vimu11g03614 389 MobiDBLite consensus disorder prediction 337 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03614 Vimu-Chr11 58000587 58002838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03614 161 262 B3 DNA Binding Superfamily AT1G28300 58.824 2.90e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu11g03614 B3 1.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03614 K09287 - gmx:106797573 236.498