Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03613 ATGGCCGCACCTTCGCTTTCCTCCGCTCTCAATTCCCTCTCCCTCTCCGCCTCTTCCCGCTTCTCTCTCCTCCCTTCGCCGCCGCACACCGTCTCCCTCCTCTTCACCAAACCCCAACACCACCCCTCCCTCCTCTGCGCCAAATGCAAACCCTCCGATGACATCGACACCTCCTTCTTCGACAACGTCAACCCACTGGAAGACATTGACTTCAACCCCCCGGAGCCCCCGGAGGGATTTGTCGCCCCTCCCTCCTTCGACGATGGCCCCCTCGAGACGGAGGACGAGATCGCCGCAGCCTACGAGGAGCTCTACGGCCCCGCCTTCAGCGGCGTTTCCGTGCTTGGGAATGACGTCTTCGAAACGGACGCCCTGGTGAAGCAGGACACGGGGTTCGGGTCCGGCTCGAAGAAGGAGAAGGTCCGCGACGGGTTCGAAGAGAGGGTGGTCCAGGTGAGGAGGGTGACGAAGGTTGTAAAGGGAGGGAAGCAGTTGCGCTTCAGAGCTGTCGTCATTGTCGGCGACAAGAAGGGCCAAGTCGGCGTCGGAGTTGGCAAGGCCAAGGAAGTCGTCGCCGCCGTTCAGAAGTCGGCCTCCAATGCCAGGAGGAACATCGTAAAGGTGCCAATGACTAAGTACTCCACTTTTCCCCACAGGTACTTTCTCGACCTTACCTTGCCCTGCACTGTATTTCTAAACTGTATTTATGCTGTTATGATAATCTGCAAAAATGTTGATGTTGTGTCCAAAATCAAGAACATGGGAGATTTTCTAAAGCCCTTGAAATGTCTGTTTTTGGCATATTATTATGATCACTCTATCAGTTTCTTCCTGATAGAGTTGGAGTTTAACTTAGAATCTGATGGAGATTATGGAGCAGCGAAGGTGATGCTTAGACCTGCTTCTCCCGGTACCGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCGGGAGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCAACCGTTATTGCTGTGCAGAAAATGAAGCAGTTTCGAGAGGTTGCTGAGGAGCGCGGTATTCCCATGGAAGAATTATGGAAGTAA 1107 0.5312 MAAPSLSSALNSLSLSASSRFSLLPSPPHTVSLLFTKPQHHPSLLCAKCKPSDDIDTSFFDNVNPLEDIDFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPAFSGVSVLGNDVFETDALVKQDTGFGSGSKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHRYFLDLTLPCTVFLNCIYAVMIICKNVDVVSKIKNMGDFLKPLKCLFLAYYYDHSISFFLIELEFNLESDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVIAVQKMKQFREVAEERGIPMEELWK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03613 368 Gene3D - 284 367 IPR014721 -
Vimu11g03613 368 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 136 209 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu11g03613 368 ProSitePatterns Ribosomal protein S5 signature. 162 194 IPR018192 -
Vimu11g03613 368 ProSiteProfiles S5 double stranded RNA-binding domain profile. 145 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu11g03613 368 FunFam 30S ribosomal protein S5 283 368 - -
Vimu11g03613 368 SUPERFAMILY Ribosomal protein S5 domain 2-like 289 360 IPR020568 -
Vimu11g03613 368 Pfam Ribosomal protein S5, C-terminal domain 289 359 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vimu11g03613 368 Gene3D - 136 207 - -
Vimu11g03613 368 Pfam Ribosomal protein S5, N-terminal domain 145 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu11g03613 368 SUPERFAMILY dsRNA-binding domain-like 141 210 - -
Vimu11g03613 368 FunFam 30S ribosomal protein S5 134 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03613 Vimu-Chr11 57978271 57979596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03613 145 234 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.258 6.24e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03613 K02988 - gmx:100820232 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03613 11 57978271 57979596 Vimu11g03613 11 57978271 57979596 ECH