Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03607 ATGGAGAACAACCCTAGTTCATCAACAAGTGATAGAAAATTGATTGAGAGGAATAGAAGAAATCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTGCCTCATCAAAGTTCAAGGATAGGTAAAGCCATAGACTACATAAAGAACTTACAGATTAAGTTGGAGAAGATGAAGGAGAAAAAAAACAACTTAACAGACATTGTAAGGTCAAGAACTGCTACCATGAATATGGAATTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTTTCATTTCATTTTCAACGAGACAATTCGTGTTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACTGTTGTTGAAAATGCAGTTCTCCATAAAATACACTGTCAGGTAGATGAATCTGCAAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTTATGTCAATGGTCGGTAGGATGA 498 0.3635 MENNPSSSTSDRKLIERNRRNQMKDLFSKLNSVLPHQSSRIGKAIDYIKNLQIKLEKMKEKKNNLTDIVRSRTATMNMELKSPQFKIQQMGSVLEVVLVTGLDFHFIFNETIRVLQEEGSDIVNASYTVVENAVLHKIHCQVDESANGASRISEKLKNLCQWSVG 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03607 165 Pfam Helix-loop-helix DNA-binding domain 12 52 IPR011598 GO:0046983
Vimu11g03607 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 65 IPR036638 GO:0046983
Vimu11g03607 165 Gene3D - 6 78 IPR036638 GO:0046983
Vimu11g03607 165 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 159 - -
Vimu11g03607 165 Coils Coil 41 68 - -
Vimu11g03607 165 SMART finulus 13 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03607 Vimu-Chr11 57873241 57875250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03607 3 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.247 1.03e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g03607 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03607 - - gmx:100810793 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03607 11 57873241 57875250 Vimu2g00667 2 3982018 3983120 PCT