Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03604 ATGGATGAAGATAGCAGCAATTCTTGGTTAAGGAGGACCAAATTCTCCCACACAGTTTGTCACCGGTTGGATTATTCCAGTTCCAGTTTAGGGTCTTTCAGCATTCAGCCAAGGACACAGCACAGTTCGAGTCTGAAATCAAGACCAGATGTAACTTTTGTTTCCGAAACCTCCTCGCAGGTTCGGAAAAAACCAATAATGAGCAAGCAGAGATCTTTGTCCCCTTTGCCTGAAACCTCTCTGTCTGAAACCTTCAAGGAAGCTAGATATGAGAGGAAGAGGTTCTCCACACCTGGTCCAAGGAGGAAAGAGCATGATAAGAAAATCATGGGGAAGTTACTGAACAAGGATTCTCGTGTGTCCAGTTCTAAATCTCCTTACAGCAGCCCAATGACTAAATCCCCTTACAACAGTCCAATGACCAAATCCCCTTACAGTAGTCCAATTAGACACCTTGCTTCAATCAAATTAAGCGACAAGTCCAAGCAGCGCAAGGATTCAGGATGGACGAAGTATTTTGACCATGGAGGAGGAAAGGTAACTGCTGTGGAAACAGCTGAGGAATGGAATGTTGATCTCTCTATGCTCTTTGTTGGTGTTAGGTTTGCTCATGGGGCTCACAGCAGGCTTTACCATGGCATGTATAAAGATGAAGCTGTGGCTGTAAAAATTATCAGGGTACCAGATGATGACGAAAATGGAATGTTAGCTGATCGATTAGAGAAACAATTCATTAGAGAAGTAACACTTTTATCTCGTCTCCACCATCCAAATGTTATCAAGTTCGTAGCAGCATGCAGAAAGCCACCTGTCTACTGTGTTATCACAGAATATCTATCAGAAGGTTCCTTGAGGTCATATTTGCATAAGTTGGAGACAAAAACTATTCCTCTAGAGAAGCTAATTACTTTTGCTCTGGATATTGCTCGTGGGATGGAATACATACACTCTCAAGGTGTCATTCACCGAGACCTTAAACCAGAGAATGTCCTTATTAATGAAGACTTTCACCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCTTACTGTGACTTATTTGCTGATGACCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGAAAATCCTATGGAAGAAAAGTTGATGTATATAGTTTTGGGCTAATCTTATGGGAAATGGTTACTGGAACTATACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGTCCAGCTGCAATGCGAGCTTTAATCGAGCAATGTTGGTCTTTGAATCCGGACAAGAGGCCTGAGTTCTGGCAGGTTGTCAAGGTATTAGAACAATTTGAATCTTCGCTTGCTCGTGATGGAACCCTGACTCTGGTGCAAAACCCTTGTTGCCAAGATCATAAGAAAGGACTTCTCCATTGGATTCAAAAGCTTGGTCCTGTGCATCAACACAATGGTCCTGTGCCTAAACCCAAATTTACCTGA 1512 0.4272 MDEDSSNSWLRRTKFSHTVCHRLDYSSSSLGSFSIQPRTQHSSSLKSRPDVTFVSETSSQVRKKPIMSKQRSLSPLPETSLSETFKEARYERKRFSTPGPRRKEHDKKIMGKLLNKDSRVSSSKSPYSSPMTKSPYNSPMTKSPYSSPIRHLASIKLSDKSKQRKDSGWTKYFDHGGGKVTAVETAEEWNVDLSMLFVGVRFAHGAHSRLYHGMYKDEAVAVKIIRVPDDDENGMLADRLEKQFIREVTLLSRLHHPNVIKFVAACRKPPVYCVITEYLSEGSLRSYLHKLETKTIPLEKLITFALDIARGMEYIHSQGVIHRDLKPENVLINEDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTIPYEDMTPIQAAFAVVNKNSRPVIPSDCPAAMRALIEQCWSLNPDKRPEFWQVVKVLEQFESSLARDGTLTLVQNPCCQDHKKGLLHWIQKLGPVHQHNGPVPKPKFT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03604 503 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 82 459 - -
Vimu11g03604 503 ProSiteProfiles Protein kinase domain profile. 196 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03604 503 CDD STKc_MAP3K-like 203 452 - -
Vimu11g03604 503 FunFam Serine/threonine-protein kinase isoform 1 186 280 - -
Vimu11g03604 503 MobiDBLite consensus disorder prediction 30 80 - -
Vimu11g03604 503 FunFam serine/threonine-protein kinase HT1 281 474 - -
Vimu11g03604 503 Pfam Protein tyrosine and serine/threonine kinase 203 452 IPR001245 GO:0004672|GO:0006468
Vimu11g03604 503 SMART serkin_6 196 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03604 503 MobiDBLite consensus disorder prediction 116 147 - -
Vimu11g03604 503 PRINTS Tyrosine kinase catalytic domain signature 423 445 IPR001245 GO:0004672|GO:0006468
Vimu11g03604 503 PRINTS Tyrosine kinase catalytic domain signature 276 289 IPR001245 GO:0004672|GO:0006468
Vimu11g03604 503 PRINTS Tyrosine kinase catalytic domain signature 314 332 IPR001245 GO:0004672|GO:0006468
Vimu11g03604 503 PRINTS Tyrosine kinase catalytic domain signature 360 370 IPR001245 GO:0004672|GO:0006468
Vimu11g03604 503 PRINTS Tyrosine kinase catalytic domain signature 379 401 IPR001245 GO:0004672|GO:0006468
Vimu11g03604 503 SUPERFAMILY Protein kinase-like (PK-like) 185 452 IPR011009 -
Vimu11g03604 503 Gene3D Transferase(Phosphotransferase) domain 1 281 478 - -
Vimu11g03604 503 MobiDBLite consensus disorder prediction 115 147 - -
Vimu11g03604 503 Gene3D Phosphorylase Kinase; domain 1 184 280 - -
Vimu11g03604 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03604 Vimu-Chr11 57845693 57848724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03604 1 503 MAP Kinase Kinase Kinase AT5G58950 57.537 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu11g03604 PK_Tyr_Ser-Thr 3.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03604 - - gmx:100784454 886.715