Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03594 ATGAAGGCCCCCCACCAGGGTGGCAACCAATCACAAATCATCCGCCGCCACCGCAACAGCAACCGCCGCTGCAACCCCAACCACAACCGCAACCGCAACCGCAACCGCAACCTCCACCGCCTAGTCGATGTGGTTGGGATCAGATGGTCTGTGGTTCTTGTCATCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTTAAATGTTCATGCTGTGGGGCTAGAGGTGTCAGTTGGCACCTCTAATCCCATAGTTGGGCAAGTTGAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATTTGGTGCTTCACATGTTAAGTGTTCCTCATGCCAATATGTGACAGAAATTGGGGCACACAACGAGCGGCCTCCATGGTCTATACAACAAAGGAAACCAGTTCCTGCAAAATCTGGTTGTTAG 423 0.5177 MKAPHQGGNQSQIIRRHRNSNRRCNPNHNRNRNRNRNLHRLVDVVGIRWSVVLVIACFHIHEVPNMLNVHAVGLEVSVGTSNPIVGQVECGSCAVLLMYPFGASHVKCSSCQYVTEIGAHNERPPWSIQQRKPVPAKSGC 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03594 140 PANTHER PROTEIN LSD1 83 138 IPR040319 -
Vimu11g03594 140 MobiDBLite consensus disorder prediction 16 33 - -
Vimu11g03594 140 NCBIfam zinc finger domain, LSD1 subclass 87 115 IPR005735 -
Vimu11g03594 140 MobiDBLite consensus disorder prediction 1 15 - -
Vimu11g03594 140 MobiDBLite consensus disorder prediction 1 33 - -
Vimu11g03594 140 Pfam LSD1 zinc finger 90 114 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vimu11g03594 zf-LSD1 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03594 - - gmx:100780865 107.842