Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03587 ATGTTCGGTTCATCGTCTTCCGCTCCGTTCAAGATGAGAGTCACCAACACGCCCTCCAGCGACCTCGTTCTCACTAACCTCGCCTATTGTTCCCCCTCCGATCTTCGCAACTTCGCCGTCCCCGGTCACAAAAACCTCTACCTCGCCACCGTCGCCGATTCCTTCATTGATGCTGTTCTACTGGCAAAGCAACTCCGGAAGAGATTTTCAAACCAGGTTATGACTGTGGGGCAAAAAGTGTTATTTGAGTACCATGGAAATAACTATAGCTTTACTGTCAGTCAAGCTACTGTTGAAGGCCAACAAAAGTCCAATTCTCTTGAAAGAGGGATGATTTCTGATGACACATACATTATTGTCAACCAACGGGAGGGGGCAACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCACTGGGTATTGGTGGCTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGAATCAAGCACGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCTGAAGTTTTGAGCAAATTTGTTGGGGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGACGCCGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGCAAGTCAAGGGGTTCAACTCGGGATGGTACTGGAGTTCATGACAGCATAGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTCAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAAGCTCTTTTAAGACCAGGGAGATTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGACTACAAATTCTTCAAATTCACACCAACAAAATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTGTCATATGCTTTAAATAGACAATTAAGTCTAGATGATCTCACTAAGCAAGTGGAGGAAGAGAACATTAAGGTTACAATGGAAGACTTTTTGAATGCACTCCAAGAAGTTATTCCGGCGTTTGGTGCTTCAACTGATGATCTTGAAAGATGCAGACTACATGGCATGGTGGAGTGTGGTGATCGTCATAAACACATTTACCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGATCCCGTGGCAGTGGTAAAACTGCACTAGCAGCTACTGTTGGTATTGACAGTGATTTCCCGTATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAGGTCACCCTTGAGTGTCATAGTTCTTGATGACATTGAGAGATTATTAGAGTATGTAGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTTTTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTGTTGGCACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCCGTTACATACCACGTTCCTACCTTGAACACAAAGGATGCAAAGAAGGTCCTTGAACAGTTGAGTGTATTCTCTGAGGACGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATAAGGAAACTATACATGTTGATTGAAATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCGGAGGCCATCTATTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATTATAA 2001 0.4253 MFGSSSSAPFKMRVTNTPSSDLVLTNLAYCSPSDLRNFAVPGHKNLYLATVADSFIDAVLLAKQLRKRFSNQVMTVGQKVLFEYHGNNYSFTVSQATVEGQQKSNSLERGMISDDTYIIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVVGTTSELGFLDSIGFCDTFSVTYHVPTLNTKDAKKVLEQLSVFSEDDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIYSGKEKINISHFYDCLQDVVRL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03587 666 FunFam vesicle-fusing ATPase isoform X1 417 588 - -
Vimu11g03587 666 FunFam Vesicle-fusing ATPase 321 408 - -
Vimu11g03587 666 CDD RecA-like_NSF-SEC18_r1-like 142 318 - -
Vimu11g03587 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 418 IPR027417 -
Vimu11g03587 666 Pfam Cell division protein 48 (CDC48), domain 2 56 109 IPR004201 -
Vimu11g03587 666 FunFam Vesicle-fusing ATPase 47 130 - -
Vimu11g03587 666 PANTHER VESICULAR-FUSION PROTEIN NSF 55 665 IPR039812 GO:0016887|GO:0035494
Vimu11g03587 666 ProSitePatterns AAA-protein family signature. 290 308 IPR003960 GO:0005524|GO:0016887
Vimu11g03587 666 SMART AAA_5 455 593 IPR003593 GO:0016887
Vimu11g03587 666 SMART AAA_5 175 322 IPR003593 GO:0016887
Vimu11g03587 666 FunFam Vesicular-fusion ATPase SEC18 131 321 - -
Vimu11g03587 666 Gene3D - 130 320 IPR027417 -
Vimu11g03587 666 Pfam ATPase family associated with various cellular activities (AAA) 460 573 IPR003959 GO:0005524|GO:0016887
Vimu11g03587 666 Pfam ATPase family associated with various cellular activities (AAA) 179 319 IPR003959 GO:0005524|GO:0016887
Vimu11g03587 666 Gene3D - 417 588 IPR027417 -
Vimu11g03587 666 SUPERFAMILY Cdc48 domain 2-like 51 133 IPR029067 -
Vimu11g03587 666 Gene3D - 48 129 - -
Vimu11g03587 666 Pfam AAA+ lid domain 346 401 IPR041569 -
Vimu11g03587 666 Gene3D - 321 408 - -
Vimu11g03587 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 635 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03587 Vimu-Chr11 57557873 57567937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03587 170 386 Calmodulin-binding Proteins AT3G56690 38.914 1.53e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03587 K06027 - gmx:100779259 1126.69