Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03586 ATGGTTGATAATAGTGTGTTAGAGCTGAACCTTGGTTTTTGTAACAACAACGATAACAAGAACAAAAACAAGAACAATAACGATAACGTTATTGTTGGTGGTGATGCAGATGCAGGACAGTCAGCGAGGCAAAGGTGTCCGGCACCATTTCTGTTGAAGACGTACGATCTGTTGGAAGAAGGTGAGAGTGAAGATATGACAAGAATTGTATCGTGGAATGAAGAAGGAAGTGGTTTTGTTGTGTGGTCTCCTGCAGAATTCTCTGAGCACACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACTTATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAACACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTTAAGTCTTCTTCTGAGGAAAATGCAACAGAAGAAAACAATCAGCAACTTCTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAATGCAAAGCACTTGAAATCAAGTTGCTCGCATGCCTCTCTCAGTTTATGGATACCCAACAAACTAAAATTAGAAGACTTTGTTAA 654 0.3991 MVDNSVLELNLGFCNNNDNKNKNKNNNDNVIVGGDADAGQSARQRCPAPFLLKTYDLLEEGESEDMTRIVSWNEEGSGFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENATEENNQQLLMEENKNLKKERLELQMQIDECKALEIKLLACLSQFMDTQQTKIRRLC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03586 217 SMART hsfneu3 46 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03586 217 FunFam Heat stress transcription factor A-6b 43 143 - -
Vimu11g03586 217 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03586 217 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03586 217 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03586 217 ProSitePatterns HSF-type DNA-binding domain signature. 92 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03586 217 Coils Coil 160 197 - -
Vimu11g03586 217 MobiDBLite consensus disorder prediction 18 41 - -
Vimu11g03586 217 Pfam HSF-type DNA-binding 50 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g03586 217 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 43 189 IPR027725 -
Vimu11g03586 217 Gene3D - 42 143 IPR036388 -
Vimu11g03586 217 SUPERFAMILY "Winged helix" DNA-binding domain 47 142 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03586 Vimu-Chr11 57549069 57551041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03586 38 211 HSF AT5G62020 35.407 3.64e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu11g03586 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03586 K09419 - gmx:100789792 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03586 11 57549069 57551041 Vimu11g03586 11 57549069 57551041 ECH