Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03582 ATGTACGTAGCTTCCATGCGTAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGACATCCAGCACGCCAACACCCTGGCGTCAGATTTTCCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCGGCAGCGCACTTGTTTCTTTTTCTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGCTAAGAATTCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCTCTTTATTGCAACTTCAGAAAGGTATCACTGACACTGAGGATAAGAAGCAAAAGGCTGTATGCATGGAGAGGTATCGCAGAAGAGATGATGAGGATTATAGACAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATACTAAGATTGTGTTACCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACTATATCACAATCATGCCCATTTTGCCGTGACAGTCTGAAGAGAGTGAACTCAGGTGATCTGTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGACAAGGGAGAATCTGAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATTGTTCCAGACTCCCTTTTTGATGCTTATGACTCTCACATACGATCAAATCAATCACTTATTAACAAGAGATCTGCACATTCTGTTCTTGTCATTTAG 795 0.4239 MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGITDTEDKKQKAVCMERYRRRDDEDYRQSSDIDIEREDECGICMDMNTKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDAYDSHIRSNQSLINKRSAHSVLVI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03582 264 FunFam RING/U-box superfamily protein 129 198 - -
Vimu11g03582 264 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vimu11g03582 264 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Vimu11g03582 264 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Vimu11g03582 264 SUPERFAMILY RING/U-box 140 193 - -
Vimu11g03582 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
Vimu11g03582 264 PANTHER RING FINGER PROTEIN 41, 151 8 249 - -
Vimu11g03582 264 SMART ring_2 151 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03582 Vimu-Chr11 57516957 57520403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03582 K25840 - gmx:100777318 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03582 11 57516957 57520403 Vimu2g00637 2 3780912 3785506 PCT