Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03562 CAGCCTTCAGAGTCTTTGAAGTGTCCGAGATGTGACTCTACCAACACCAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGAAATGTTCCGGTGGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAACCAAACACTCCAACACCATCTTCCACCACTGCCACTACCACCCCGACAACAGCCAGCCCTTCTACTTGCACTGCCACCGTCACAACCTCAATTGGCAACATGGATGCTTTGCTGGGTAGTAGCCACATGACAATTCAAACTCCTCTTGCAGATGATCAGAAACACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTTCTACAACAGAATCTGATGAACGCGAGAGACTTAGACGGCAAAGATTTTGGTATTGGTATTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCGGTGTCAACCTCTCTGAGATCATCCAATGTTTATAACTATGGGGAGGAGTTCAAAGCAGCGGAAGAACCAACCATCAACAGTACTGCTATAGCGCCTAGCACAGGCGGCACTAACACACAGCCATGGGAGATAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTTTTGGAATTGGGAGGACTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGACATCAAACCATGA 831 0.4657 QPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPNTPTPSSTTATTTPTTASPSTCTATVTTSIGNMDALLGSSHMTIQTPLADDQKHMASSLYQALIRPPPLLLQQNLMNARDLDGKDFGIGIGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSNVYNYGEEFKAAEEPTINSTAIAPSTGGTNTQPWEIAATSGVGLGTSNFWNWEDFDSLVSTDLKDPWDDSDIKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03562 276 ProSiteProfiles Zinc finger Dof-type profile. 6 60 IPR003851 GO:0003677|GO:0006355
Vimu11g03562 276 MobiDBLite consensus disorder prediction 44 83 - -
Vimu11g03562 276 Pfam Dof domain, zinc finger 5 58 IPR003851 GO:0003677|GO:0006355
Vimu11g03562 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 170 IPR045174 GO:0003700|GO:0006355
Vimu11g03562 276 MobiDBLite consensus disorder prediction 63 83 - -
Vimu11g03562 276 ProSitePatterns Zinc finger Dof-type signature. 8 44 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03562 Vimu-Chr11 57283735 57285771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03562 6 63 C2C2-Dof Transcription Factor Family AT1G28310 84.746 2.32e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g03562 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03562 - - gmx:100818111 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03562 11 57283735 57285771 Vimu2g00625 2 3687094 3687930 PCT