Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03553 ATGGACAGCACCGATTCATCTTCAGGCTCTCAGCACCCACACCTTCCTCCAGGCTTTCGCTTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTTCTTCTACACCCCTTCCCGTCGCCATCATCGCCGATGTTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAAGTAAAGCAACTTTTGGTGAACAAGAGTGGTACTTTTTCAGCCCGAGGGATCGGAAATACCCAAATGGGGTTAGACCCAACAGAGCTGCTACTTCTGGGTATTGGAAAGCAACCGGAACTGACAAACCTATACTAACATCTGATGGGCACCAGAAAGTTGGAGTTAAGAAAGCACTTGTTTTCTACGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAATATAGGCTTGTTCATGATTCCTTTAATTCAACCTCAAAACCCCCTCCTCTTGTTCCTCCAAACAAGAAAAATTCCCTCAGACTTGATGATTGGGTGTTGTGTCGAATATACAAGAAAAGCAACAGCACCACCGTAACAAGGCCACCCTTGATGGAGCATGGAGAGGAGCTTTCAATGGAGAACATGCTTCCAACGATGTCAACTTTGTCAATGGCTAATAACAATACTCAAAACTCTAAACCTCCGTCTTCGAGGAGTACGAGTTATGGAGCACTGGGACTTGAAAATGATGACAATTTCTTCGATGGAATCTTAGCCGTTGATCATCAGAGCATGCAAAGTGGTTCTGATTCTCACCTTTTCTCTCCAAACTCAAAGGGTACCAACTTTCCTATGAAACGTGCTCTCACATCACAACAACTTTGGAACGAGACAGGGTCTCCGGGGTCATCTTCTTCATGTAAGCGATTCCATGGTGATCTTAACAGTGGAAGCAGCAACGCTGAGGACAACGATTCCTTTGTTTCCTTGCTTAGCCAGTTTCCTCAGAACGCAAGTTTTCAACCAAACGCGATTCATGGCTCCGTTGGGAATGGTGCGCAGAGGCAACAACAACAGTTTCAACTTCCTGGTATAAATTGGAACTGA 1065 0.4592 MDSTDSSSGSQHPHLPPGFRFHPTDEELVVHYLKRKASSTPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVHDSFNSTSKPPPLVPPNKKNSLRLDDWVLCRIYKKSNSTTVTRPPLMEHGEELSMENMLPTMSTLSMANNNTQNSKPPSSRSTSYGALGLENDDNFFDGILAVDHQSMQSGSDSHLFSPNSKGTNFPMKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGSSNAEDNDSFVSLLSQFPQNASFQPNAIHGSVGNGAQRQQQQFQLPGINWN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03553 354 FunFam NAC transcription factor 56 24 183 - -
Vimu11g03553 354 PANTHER NAC TRANSCRIPTION FACTOR 56 15 213 - -
Vimu11g03553 354 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g03553 354 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vimu11g03553 354 MobiDBLite consensus disorder prediction 281 308 - -
Vimu11g03553 354 SUPERFAMILY NAC domain 10 178 IPR036093 GO:0003677|GO:0006355
Vimu11g03553 354 MobiDBLite consensus disorder prediction 209 230 - -
Vimu11g03553 354 Gene3D NAC domain 24 183 IPR036093 GO:0003677|GO:0006355
Vimu11g03553 354 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Vimu11g03553 354 MobiDBLite consensus disorder prediction 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03553 Vimu-Chr11 57052218 57053794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03553 5 354 NAC Transcription Factor Family AT1G61110 53.911 5.41e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g03553 NAM 9.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03553 - - gmx:100797132 620.928