Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03550 ATGATGATGAAGCATAGTGGAACAAAGTATTCCTCCTTCATCAATCATTATAAATACACATGCAACTCTCTTTCTCCTTCAACAAATTTCATTCAAAAGAGGATCTCTCACTTCCACAATATGGATAACATTGTATTAAAGCTGACTACTTCATACACCTTGCTTCTTTTTCTTTTCCTATCTTATAAGCCAGCTCTTTCGTTTTCTTCTAGAAATAGCCAATATTGGGGTGGTGACAGGATTTTGAGCTCTGCTTATAATGATGATCTTGTCACTAACTTGCCTGGTCAACCCAAGGTGAATTTCCAACACTATGCTGGATATGTCACAGTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAGCCAGAAGACAAACCGTTGGTGCTTTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATACGGAGCAACACAGGAGATTGGTCCATTTTTAGTGGACAGTGATGGCCATGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAGCATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCAAATACAAGCAGTGACTATGACCAATTGGGAGATGATTTAACAGCTAACGATGCTTACTCTTTTCTTCACAACTGGTTTCAAAAGTTTCCATCATACAGAACGAGAGCGTTTTACATAGCAGGGGAGAGCTATGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCTCTCTATATTGATCTCAAGGGTATTCTGTTGGGTAACCCAGAAACATCTGATGCTGAGGACTGGATGGGCCTGGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCATAAAATAATCAAAACAAGTTGTGACTTTAACAGCACTGATCCATGGCGTAACGAAGATTGTAGTGAAGCTGTGGATGAAGTACTCAAACAATACAACGAAATTGATATCTACAGTCTCTACACCTCTGTTTGCTTTGCCAGCACAGCACGTTCGGACGATCAATCCATGCAAACTTCCATGAAGCTTACATCTAAAATGATGCCTAGGATGTTGGGTGGCTACGATCCATGCCTTGATGACTATGCTAAAGCTTTTTATAATAAACCAGATGTTCAGAAGGCTCTTCATGCCAGTGATGGTCACAACCTAAAGAATTGGACCATTTGCAACAACAAGATATTCATTGACTGGGCAGATTCAAAGCCATCTGTTATCCCAATTTACAAGAAGCTTATGTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTGTTGTCCACAAGATACAGCTTAAGCTCTCTTTCCTTGTCTGTCACTAAATCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGTGGATGGTTTGAAGAATACGAGGGTCTTACATTTGCAACGTTTCGAGGAGCTGGGCATGCTGTTCCCTGTTTTAAACCAAGCAATTCACTTGCGTTCTTCACTTCCTTTCTGAATGGAGAATCACCACCTTCAACAAAATAA 1572 0.4141 MMMKHSGTKYSSFINHYKYTCNSLSPSTNFIQKRISHFHNMDNIVLKLTTSYTLLLFLFLSYKPALSFSSRNSQYWGGDRILSSAYNDDLVTNLPGQPKVNFQHYAGYVTVNETNGRALFYWFYEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGHGLKFNNFSWNREASMLFLESPVGVGFSYSNTSSDYDQLGDDLTANDAYSFLHNWFQKFPSYRTRAFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKIIKTSCDFNSTDPWRNEDCSEAVDEVLKQYNEIDIYSLYTSVCFASTARSDDQSMQTSMKLTSKMMPRMLGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLKNWTICNNKIFIDWADSKPSVIPIYKKLMSAGLRIWVYSGDTDGRVPVLSTRYSLSSLSLSVTKSWRPWYHENEVSGWFEEYEGLTFATFRGAGHAVPCFKPSNSLAFFTSFLNGESPPSTK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03550 523 Gene3D alpha/beta hydrolase 85 344 IPR029058 -
Vimu11g03550 523 SUPERFAMILY alpha/beta-Hydrolases 88 517 IPR029058 -
Vimu11g03550 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 183 IPR001563 GO:0004185|GO:0006508
Vimu11g03550 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 220 245 IPR001563 GO:0004185|GO:0006508
Vimu11g03550 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 184 194 IPR001563 GO:0004185|GO:0006508
Vimu11g03550 523 PRINTS Carboxypeptidase C serine protease (S10) family signature 486 499 IPR001563 GO:0004185|GO:0006508
Vimu11g03550 523 FunFam Carboxypeptidase 85 344 - -
Vimu11g03550 523 Gene3D - 422 516 - -
Vimu11g03550 523 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 90 503 IPR001563 GO:0004185|GO:0006508
Vimu11g03550 523 Gene3D - 375 411 - -
Vimu11g03550 523 FunFam Carboxypeptidase 422 516 - -
Vimu11g03550 523 ProSitePatterns Serine carboxypeptidases, serine active site. 234 241 IPR018202 GO:0004185
Vimu11g03550 523 Pfam Serine carboxypeptidase 95 516 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03550 Vimu-Chr11 57007744 57011139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03550 380 517 Calmodulin-binding Proteins AT2G22960 33.813 4.15e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03550 K16297 - gmx:100815993 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03550 11 57007744 57011139 Vimu2g00609 2 3585294 3588679 PCT