Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03548 ATGGTAGCAGGTTTTCATTTTCGCTTTCGGTCGGCCACAATGAGGCGCGACGGCACCGGTAAAGAGAAGAGCAGGGGTTTTTGCGGCGGTGTCATGGCGGATGAGGATGTCGACTTTTCGAAACTGTTCCATGGTGATGATGACGACGATGACATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTTGATGAAGACGATGATTGTGATTTTTTGGAGAAAATTCCCGATGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACAACAGTTTTCTAGGTTGGGCTTTGTAGATTCAATTACGAGTTGTTCTCCGTTCTGCTCAGATGGTTCGGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATATTGAACCTGAAAACGAGGGACCTCAATCCCAGGCGTGCTCCTCCCCAAATGCATTTCCCGGTAATCTCAGTAACTCCCTCTCCCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAGAGGACCAGAGTCTCTAAACATGAGGTACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACCGTCAAAAGATATATCAATTTGTAGAGATAATTTGAATCCAAGTCTGTGGAAAGGTGAAAATGAGATCCAATTCAAGCATTTCCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATAGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCTGGGCAACAGGAAAATGATTCGTGTACATCTTTTGAAGCATTTATGGATGCTGATAGATTTTTGCATGTTGCCACTTCACCTGATTCTACTATTGGTCAAGGTTCTCATTGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACTCTTCTCTTGGTATTTTGCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAATATGAAGGCCAAAAGTGTGGAGTTAAATTCTGATATTACATGTATGAGTAGTGGCATGCCCTCAAACACTACTGGGTGGACGTCTTTTCAAGATTTAACTGATAATGTTTATCCATCTTTTCATTCTAGAAAAGTTAATTTTGATGACCTGCCATCATTGTCTCTTTCAGCTTATGATTCGTACGTACCATATGGAGACCATTATCAGGATGCTAAGTTCATTGTAGGCCAATCGGTGAGACAAACACCTGATATTTTTCCTTCTATAGGGTCTCAGGCTTACCAGTTTTATGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCAAATCAATATCAAGATAGCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCGAGGCACTAATTACCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTAAACATAAACTTGCTGATTCTCATCTTTCAAAAGGAAAATTTGAGAATTTCCATGTCCAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCAGTGGGAATTCCTCTAATATTTCTCAATCGTCTAGATACGCTGATTCTCAGTCCTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGGGTTGCATTGCAGGATCTATCTCAGCCAAGGTCAGAGGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTTAATTGCTCTGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACGATTGCATTAATATTAAAGGAAAGACCTCCATTACCTAATGGGGGCACCAGTGCCCACAAAAGTGAATTGGATTCTTTGAATCTGGATGTGGATGATGATGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCTAATATTTGTGAGGATGAGTCAAGTAGACATCCAATCAAGAGTATGAATTTGCAAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAATTGCGTAGCAAGGTAACTAGTCAAACAAAAATCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTCATGAGGTTGCAAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGTAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTCCGGGCAAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGACGATCTCTACAGTTACTTCAGATTTCTTAGATATGACCCTTATGATGTCTATACATCATTTTGTTCTAAAATTAAGAACCGAATTAGCAGAGATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATACGCTGATGCTGGCACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTTAGACAAGCTTGTGATCATCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAACGATCCTCCGGAAGATGCATTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAGTTCGACTGAGCACATCTAGAGTGTTCTCAAAAGTCACTCTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTTGAAGAATTTGAGCCTTGGTCTCAAAGTCAGTCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTCCTATACATCAAAAAGCTCTTCTGAGAATAGCACTTTGAGGGAAGATAATGATTGCCCTGGGAACCCCTCGGATGCTGAAAATGGGAAATCCTCAATTAATTCTCATGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGAGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCGGTTGTTGCCAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGTCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGGATTCTAGCCCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACCGTGGATGATTTAAAATATTTGTTCATGATGTGA 4125 0.4102 MVAGFHFRFRSATMRRDGTGKEKSRGFCGGVMADEDVDFSKLFHGDDDDDDMFYIDMNTVQKVLDEDDDCDFLEKIPDDSSSKNVSPSESGTHDSFQIQNGSQVLEEQQFSRLGFVDSITSCSPFCSDGSDSGVRGSVGVSDSVANSWLDIEPENEGPQSQACSSPNAFPGNLSNSLSPGESDEVFCTERTRVSKHEVPACSVESSFPEAPSKDISICRDNLNPSLWKGENEIQFKHFREDVEFENTSISSIVDNDDINIEGYVEDTTGGVSGQQENDSCTSFEAFMDADRFLHVATSPDSTIGQGSHCSSDFIDYHGSSTYYEGMHSGPFVADSSLGILPNGFCSQLPNDEMMNNMKAKSVELNSDITCMSSGMPSNTTGWTSFQDLTDNVYPSFHSRKVNFDDLPSLSLSAYDSYVPYGDHYQDAKFIVGQSVRQTPDIFPSIGSQAYQFYENEDNYAVISGISNQYQDSNGRIASFQENVDNLNLQAANISWPHAEALITSEKQFGCVKREGGVKHKLADSHLSKGKFENFHVQEDPDVCIIEDISHPAPTSRSTISGNSSNISQSSRYADSQSYMVGSTRLKACDERNILRVALQDLSQPRSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSFNCSGGILADDQGLGKTVSTIALILKERPPLPNGGTSAHKSELDSLNLDVDDDVLPQNGRVKEESNICEDESSRHPIKSMNLQNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTKISVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFCSKIKNRISRDPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKVRLSTSRVFSKVTLNNCLSDQGCDNSPGCPASEVEEFEPWSQSQSYESSKIKAALEVLKSLRKPQSYTSKSSSENSTLREDNDCPGNPSDAENGKSSINSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEECLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03548 1374 SMART ultradead3 615 918 IPR014001 -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 73 96 - -
Vimu11g03548 1374 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1369 IPR001650 -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 79 96 - -
Vimu11g03548 1374 Coils Coil 469 489 - -
Vimu11g03548 1374 CDD SF2_C_SNF 1219 1326 - -
Vimu11g03548 1374 SUPERFAMILY RING/U-box 1054 1114 - -
Vimu11g03548 1374 ProSiteProfiles Zinc finger RING-type profile. 1057 1096 IPR001841 -
Vimu11g03548 1374 SMART ring_2 1057 1095 IPR001841 -
Vimu11g03548 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 941 IPR027417 -
Vimu11g03548 1374 Gene3D - 956 1374 IPR027417 -
Vimu11g03548 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 949 1373 IPR027417 -
Vimu11g03548 1374 Gene3D - 713 804 IPR038718 -
Vimu11g03548 1374 Gene3D - 828 942 IPR038718 -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 151 182 - -
Vimu11g03548 1374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 730 903 IPR014001 -
Vimu11g03548 1374 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 712 800 - -
Vimu11g03548 1374 SMART helicmild6 1233 1316 IPR001650 -
Vimu11g03548 1374 CDD DEXDc_SHPRH-like 619 941 - -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 794 816 - -
Vimu11g03548 1374 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 824 953 - -
Vimu11g03548 1374 Gene3D - 588 678 IPR038718 -
Vimu11g03548 1374 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 470 1373 - -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 793 836 - -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 1164 1200 - -
Vimu11g03548 1374 Pfam Helicase conserved C-terminal domain 1217 1316 IPR001650 -
Vimu11g03548 1374 Pfam Zinc finger, C3HC4 type (RING finger) 1057 1093 IPR018957 GO:0046872
Vimu11g03548 1374 ProSitePatterns Zinc finger RING-type signature. 1072 1081 IPR017907 -
Vimu11g03548 1374 MobiDBLite consensus disorder prediction 153 182 - -
Vimu11g03548 1374 Pfam SNF2-related domain 634 1018 IPR000330 GO:0005524|GO:0140658
Vimu11g03548 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1042 1108 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03548 Vimu-Chr11 56970395 56979957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03548 542 1373 RAD5 or RAD16-like Gene Family AT1G61140 60.539 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu11g03548 SNF2_N 2.4e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03548 - - gmx:100802436 2087.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03548 11 56970395 56979957 Vimu2g00608 2 3568862 3578665 PCT