Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03543 ATGAAAACCTCAAGAAGCTTTCTATTCCTCAATTGGGCAGGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCAGGATCTGTCTGGAAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGGGAATTTGTCATCTCTTACCACCTTAAATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAAAAATATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCATCCCCTGCACCCCTTGCTATGGCTCCCTCCCCAGAAATATCACCTTGGAAAGTGGCCAATAATCCATCTGCTACCACCATAAAAGCTCCAATACCTGCAATTGCTGAGAGGTCTTTCAGAACCAAGAAATTAGCTTGGATTATTGTTGCAGGCTTTTTAACATTTATTGCATTAGGAGTTTGTCTTCTTATGTTGCGGTGCTTTAAGAGAAGACCAGAGAACAAGAGTTATAAGAAACACAACATGAACGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCCTTTTGAAGCAACTGATGATGAGGAGAAAGCGCCACCACATAAACTCCCAATCATTCCTGGAGAGAATTTAATCATTAATCGAGCTATGTTTGGTGAAGACACCAAAAGACAAATTGTAACAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAATACACAACTAGTTTTTCCCTAGAAACTTATATTGGCGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTCAGGAAGCTGAGTGCTACTGCTTCGATTGACCTAAACCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAAAATTCAACATGCTAATATTGTAAAGTTTATGGGCTACTGTGCCGAGCATAGCCAACACTTACTTGTATATGAGTATTGCAGTAATGGCACCCTTCATGATGCATTACATACAGATGCTAAACTTCAGATTAACCTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCGGCTAGAGCTCTAGAGTATTTGCATGAGTACTTTCAGCCACCTATTGTGCACGGAAACTTTACATCTGCTAATGTACTACTAAATGACAAGTTGGAAGTTCAGGTCTCTGATTGTGGATTAGGATGCACTTTAGAGGAGCCAAATCCTAGTAAGCGCTTTCCTGAGGCCTTTGGTATGCACAAACTTTGGAATGGGTCAAGCTTGTCGGGACACCAACTCACTACTAATGGTTACAGTGCCCCAGAATACGAGAATGGAAGTTATACACTTCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTAGAACTCCTCACTGGACGAAAATCCTATGACAGCTCACTGGCTCGTGGAGAGCAGTTTTTGGTTAGATGGGCAGTCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTTGACCCTTCTTTAAATGCAGAATATCCTAAGAAATCCTTGTCACGTTTTGCAGACATTATTTCCTCATGTATACAGCATGAACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 1674 0.4188 MKTSRSFLFLNWAGILATTRLEGPFHPGSVWKQLEWSAASLNGEFVISYHLKFAEQSTFWDPFCFAGPPSSGSEYREQYILWANSSGVVEKYGNPFNTTIIPSPPAASPAPLAMAPSPEISPWKVANNPSATTIKAPIPAIAERSFRTKKLAWIIVAGFLTFIALGVCLLMLRCFKRRPENKSYKKHNMNVYKRSLHKRTSSDSPFEATDDEEKAPPHKLPIIPGENLIINRAMFGEDTKRQIVTNSIKVYTVASLQQYTTSFSLETYIGEGMLGPVYRAELPDGKLLAVRKLSATASIDLNHEQFLQLASSVSKIQHANIVKFMGYCAEHSQHLLVYEYCSNGTLHDALHTDAKLQINLSWDDRIQVSLGAARALEYLHEYFQPPIVHGNFTSANVLLNDKLEVQVSDCGLGCTLEEPNPSKRFPEAFGMHKLWNGSSLSGHQLTTNGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLARGEQFLVRWAVPQLHDIDALSKMVDPSLNAEYPKKSLSRFADIISSCIQHEPEFRPAMSEIVQDLLRMM 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03543 557 Gene3D Phosphorylase Kinase; domain 1 227 340 - -
Vimu11g03543 557 PANTHER OS01G0253100 PROTEIN 202 554 - -
Vimu11g03543 557 Gene3D Transferase(Phosphotransferase) domain 1 341 557 - -
Vimu11g03543 557 Pfam Protein tyrosine and serine/threonine kinase 265 553 IPR001245 GO:0004672|GO:0006468
Vimu11g03543 557 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 341 557 - -
Vimu11g03543 557 ProSiteProfiles Protein kinase domain profile. 263 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03543 557 MobiDBLite consensus disorder prediction 196 217 - -
Vimu11g03543 557 SUPERFAMILY Protein kinase-like (PK-like) 243 553 IPR011009 -
Vimu11g03543 557 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 231 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03543 Vimu-Chr11 56885633 56890821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03543 93 557 Strubbelig Receptor Gene Family AT4G03390 44.879 4.58e-133 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu11g03543 PK_Tyr_Ser-Thr 2.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03543 - - pvu:PHAVU_002G224200g 744.962