LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g03505	ATGCGGTGTTTCACTTTCTTCGACCGAGTTTCCAGAGCTTTCCGTGACCATGGTTCCAACTTCAAGCTTCTGCTTCTCTGCACCACCTTAAGTGGTGGAGGGGTTCTGGCTTACGGAGAGGCTATAGGGGCATCTGAAGCGGCGGTGCCGGAGAAAAAAAAGGTGGTGGTGCTGGGAACAGGGTGGGCTGGCACGAGTTTCTTGAAGAATCTGAACAATCCCAGATATGAGGTTCATGTGGTCTCGCCTCGCAATTACTTTGCATTTACTCCTTTACTGCCCAGTGTTACCTGCGGCACCGTGGAAGCCCGCAGCATTGTCGAACCTGTCCGCAATATTTTTCGGAAGAAAACGGTGGACATTCAATTCAGTGAAGCAGAATGTCTTAAGATTGACTCAGCAAACAGGAAGGTATACTGTCGATCTAATATAAGTAACAACGAGAAAGAAGAATTTGTGGTGGACTATGACTACCTAATCATAGCCGTAGGAGCAAATGTCAACACATTCAATACTCCGGGAGTGACTGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACCGTTATTGACTGCTTCGAGAGAGCAAGTTTGCCAAGTGTAAGTGAGGAAGAAAAGAAGAGAATTCTTCACTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTTGAGTTTGCAGCCTCACTACATGACTTTGTCACTGAGGATTTGGTCAACTTATACCCTGGGATAAAAGATTTAGTTAAAATTACGCTTCTGGAAGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTACTTTCGCTGAAGACAAGTTTAGAAGAGATGGTATTGATGTCAAAACAGGGTCCATGGTTGTGAAGGTTTCTGATAAAGAAATTTCTACTAAGGAAATGAAAAATGGAGGAGAAATTACCACAATCCCATATGGAATGGCTGTCTGGTCAACTGGTATCGGCACTCGTCCATTTATAAAAGATTTTATGTCACAAATTGGTCAGACTAATAGACGTGCCATAGCTACTGATGAGTGGTTGAGAGTTGAATCAACTAGCAACGTGTATGCACTTGGTGACTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACAAAGACAATTCAGGAACTCTCACTGTCAAGGAATTTCAGGAGGTATTGGATGACATCTGTGAGAGATACCCTCAGGTGGGGCTATATCTAAAGAGTAAGCAGATGCACGACCTTGCTGATTTGTTGAAAGAGTCCAAGGGAGATGTTGAAAAAGAATCTATTGAACTGAATATCGAAGAACTAAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCAGCTACAGCGCAGGTCGCATCTCAGCAAGGCACCTACCTGGCCCAGTGCTTTAATCGGATGGAAGAGTGTGAGAAAAATCCAGAGGGTCCCATCAGATTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTCTAGGAGGAGAGCAAACCGCTGCACAGCTTCCCGGCGATTGGGTTTCAATTGGACACAGCAGTCAATGGCTGTGGTATTCCGTCTATGCAAGGTACAAGCAAGTAAGCTGGCGCACAAGAGCGTTAGTAGTATCAGACTGGACAAGGCGTTTTATTTTTGGGAGAGATTCAAGTCAAATATGA	1734	0.4418	MRCFTFFDRVSRAFRDHGSNFKLLLLCTTLSGGGVLAYGEAIGASEAAVPEKKKVVVLGTGWAGTSFLKNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKTVDIQFSEAECLKIDSANRKVYCRSNISNNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVTEDLVNLYPGIKDLVKITLLEAGDHILSMFDKRITTFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIKDFMSQIGQTNRRAIATDEWLRVESTSNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVGLYLKSKQMHDLADLLKESKGDVEKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAQCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYARYKQVSWRTRALVVSDWTRRFIFGRDSSQI	577

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu11g03505	577	FunFam	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	420	576	-	-
Vimu11g03505	577	Pfam	Pyridine nucleotide-disulphide oxidoreductase	53	376	IPR023753	GO:0016491
Vimu11g03505	577	ProSiteProfiles	EF-hand calcium-binding domain profile.	374	409	IPR002048	GO:0005509
Vimu11g03505	577	PANTHER	NADH DEHYDROGENASE	48	577	IPR045024	GO:0003954\|GO:0006116
Vimu11g03505	577	Coils	Coil	438	458	-	-
Vimu11g03505	577	Gene3D	-	44	407	-	-
Vimu11g03505	577	Gene3D	-	418	576	-	-
Vimu11g03505	577	PRINTS	FAD-dependent pyridine nucleotide reductase signature	156	174	-	-
Vimu11g03505	577	PRINTS	FAD-dependent pyridine nucleotide reductase signature	217	235	-	-
Vimu11g03505	577	PRINTS	FAD-dependent pyridine nucleotide reductase signature	28	47	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g03505	Vimu-Chr11	56489817	56494446	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g03505	1	577	EF-hand Containing Proteins	AT4G05020	70.673	0.0	870

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g03505	K03885		-	gmx:100809915	1069.68

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g03505	11	56489817	56494446	Vimu2g00571	2	3322389	3328135	PCT

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