Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03505 ATGCGGTGTTTCACTTTCTTCGACCGAGTTTCCAGAGCTTTCCGTGACCATGGTTCCAACTTCAAGCTTCTGCTTCTCTGCACCACCTTAAGTGGTGGAGGGGTTCTGGCTTACGGAGAGGCTATAGGGGCATCTGAAGCGGCGGTGCCGGAGAAAAAAAAGGTGGTGGTGCTGGGAACAGGGTGGGCTGGCACGAGTTTCTTGAAGAATCTGAACAATCCCAGATATGAGGTTCATGTGGTCTCGCCTCGCAATTACTTTGCATTTACTCCTTTACTGCCCAGTGTTACCTGCGGCACCGTGGAAGCCCGCAGCATTGTCGAACCTGTCCGCAATATTTTTCGGAAGAAAACGGTGGACATTCAATTCAGTGAAGCAGAATGTCTTAAGATTGACTCAGCAAACAGGAAGGTATACTGTCGATCTAATATAAGTAACAACGAGAAAGAAGAATTTGTGGTGGACTATGACTACCTAATCATAGCCGTAGGAGCAAATGTCAACACATTCAATACTCCGGGAGTGACTGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACCGTTATTGACTGCTTCGAGAGAGCAAGTTTGCCAAGTGTAAGTGAGGAAGAAAAGAAGAGAATTCTTCACTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTTGAGTTTGCAGCCTCACTACATGACTTTGTCACTGAGGATTTGGTCAACTTATACCCTGGGATAAAAGATTTAGTTAAAATTACGCTTCTGGAAGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTACTTTCGCTGAAGACAAGTTTAGAAGAGATGGTATTGATGTCAAAACAGGGTCCATGGTTGTGAAGGTTTCTGATAAAGAAATTTCTACTAAGGAAATGAAAAATGGAGGAGAAATTACCACAATCCCATATGGAATGGCTGTCTGGTCAACTGGTATCGGCACTCGTCCATTTATAAAAGATTTTATGTCACAAATTGGTCAGACTAATAGACGTGCCATAGCTACTGATGAGTGGTTGAGAGTTGAATCAACTAGCAACGTGTATGCACTTGGTGACTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACAAAGACAATTCAGGAACTCTCACTGTCAAGGAATTTCAGGAGGTATTGGATGACATCTGTGAGAGATACCCTCAGGTGGGGCTATATCTAAAGAGTAAGCAGATGCACGACCTTGCTGATTTGTTGAAAGAGTCCAAGGGAGATGTTGAAAAAGAATCTATTGAACTGAATATCGAAGAACTAAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCAGCTACAGCGCAGGTCGCATCTCAGCAAGGCACCTACCTGGCCCAGTGCTTTAATCGGATGGAAGAGTGTGAGAAAAATCCAGAGGGTCCCATCAGATTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTCTAGGAGGAGAGCAAACCGCTGCACAGCTTCCCGGCGATTGGGTTTCAATTGGACACAGCAGTCAATGGCTGTGGTATTCCGTCTATGCAAGGTACAAGCAAGTAAGCTGGCGCACAAGAGCGTTAGTAGTATCAGACTGGACAAGGCGTTTTATTTTTGGGAGAGATTCAAGTCAAATATGA 1734 0.4418 MRCFTFFDRVSRAFRDHGSNFKLLLLCTTLSGGGVLAYGEAIGASEAAVPEKKKVVVLGTGWAGTSFLKNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKTVDIQFSEAECLKIDSANRKVYCRSNISNNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVTEDLVNLYPGIKDLVKITLLEAGDHILSMFDKRITTFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIKDFMSQIGQTNRRAIATDEWLRVESTSNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVGLYLKSKQMHDLADLLKESKGDVEKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAQCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYARYKQVSWRTRALVVSDWTRRFIFGRDSSQI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03505 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 576 - -
Vimu11g03505 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 376 IPR023753 GO:0016491
Vimu11g03505 577 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Vimu11g03505 577 PANTHER NADH DEHYDROGENASE 48 577 IPR045024 GO:0003954|GO:0006116
Vimu11g03505 577 Coils Coil 438 458 - -
Vimu11g03505 577 Gene3D - 44 407 - -
Vimu11g03505 577 Gene3D - 418 576 - -
Vimu11g03505 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Vimu11g03505 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Vimu11g03505 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Vimu11g03505 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 346 368 - -
Vimu11g03505 577 SMART efh_1 378 406 IPR002048 GO:0005509
Vimu11g03505 577 SUPERFAMILY FAD/NAD(P)-binding domain 212 371 IPR036188 -
Vimu11g03505 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 403 - -
Vimu11g03505 577 SUPERFAMILY FAD/NAD(P)-binding domain 52 269 IPR036188 -
Vimu11g03505 577 SUPERFAMILY EF-hand 329 463 IPR011992 -
Vimu11g03505 577 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03505 Vimu-Chr11 56489817 56494446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03505 1 577 EF-hand Containing Proteins AT4G05020 70.673 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03505 K03885 - gmx:100809915 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03505 11 56489817 56494446 Vimu2g00571 2 3322389 3328135 PCT