Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03494 TTGCTATTTATACAACACCCAAGTACGTTCACAATTAAATCTTTCTCTATTTTCTCACATCTCCTCATCTTCATCACGCCAACTTCAAAAGCATTACTAATGGGTAGATCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGACCATGGACAACAGAAGAAGACCAGAAACTCGTTGATTACATTCAGAAACATGGCTACGGCAATTGGAGAGTACTTCCTAAGAATGCTGGGTTGCAGAGGTGTGGCAAGAGTTGTCGACTCCGATGGACAAACTATCTCCGACCAGATATAAAGCGTGGTCGATTCACTTTTGAAGAGGAAGAGGCCATAATACAACTACATAGCATTCTTGGAAACAAGTGGTCGGCTATTGCTTCTCGTTTGCCTGGTAGAACAGACAATGAAATCAAGAATTACTGGAATACCCACATTAGAAAAAGGCTTCTGAGGATGGGGATTGACCCTGTGACGCATAGGCCAAGGCTTGATCTTTTGGATCTCTCTTCCATCCTAAGTTCATCCCTTTATGGTCCAACACACATGAACATCCAAAGACTCCTTGGTACACAGACAATGGTGAACCCTGAACTTTTAAAGCTTGCTTCGTCGCTCTTTTCTTCTCAGCATCGTGAAAACCTCAACGTCTGTCCACAAAATTGTGAATACAACCTGCTCTGTGATCCTCAAATTGACCAAATCCCACACCTCGTACAGACTCAGGAATTTTCTCAAAAACCATGTAAAACACCAGACGATACAATGAATCCCCCTTGTTCTTCCTTGTCAATGCCTTTCGCTCAAGAACAGTTTCTTGAATGCAATATGAACCCGTACCCTTCTGTTTTCCATGACTCCTCCTTCCAACAACATTCTCAACCAAGTGAATTACAATGCCACGGAATCGATACTAGTTATGTTGCTCAATTACCTAGCTATAACTACCATGGCTCTGATTATGACGCAAATCTTATGGACCCTTCCGAATCCTCAACCTATAATAACCATTCCCATAACAGCAATCAGAACTTCGGCTTTGCTTCAGTTATCTCAACGCCTTCGTCAAGCCCCACGCCGTTAAATTCGAACTCGACGTACGTCAATGGAAGTAGCAGTACTGAGGATGAGATAGAAAGCTATGTCAGCAGCAACTTGATGAGATTAATTGAAATCCCAGACATGTTGGGTGTGAATGAGTTCATATAA 1206 0.4229 MLFIQHPSTFTIKSFSIFSHLLIFITPTSKALLMGRSPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEEAIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYGPTHMNIQRLLGTQTMVNPELLKLASSLFSSQHRENLNVCPQNCEYNLLCDPQIDQIPHLVQTQEFSQKPCKTPDDTMNPPCSSLSMPFAQEQFLECNMNPYPSVFHDSSFQQHSQPSELQCHGIDTSYVAQLPSYNYHGSDYDANLMDPSESSTYNNHSHNSNQNFGFASVISTPSSSPTPLNSNSTYVNGSSSTEDEIESYVSSNLMRLIEIPDMLGVNEFI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03494 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Vimu11g03494 401 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Vimu11g03494 401 FunFam Transcription factor MYB39 102 163 - -
Vimu11g03494 401 MobiDBLite consensus disorder prediction 344 373 - -
Vimu11g03494 401 CDD SANT 102 145 IPR001005 -
Vimu11g03494 401 SMART sant 99 147 IPR001005 -
Vimu11g03494 401 SMART sant 46 96 IPR001005 -
Vimu11g03494 401 Gene3D - 46 99 - -
Vimu11g03494 401 FunFam MYB-related transcription factor 46 99 - -
Vimu11g03494 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 34 322 - -
Vimu11g03494 401 Gene3D - 102 149 - -
Vimu11g03494 401 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Vimu11g03494 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Vimu11g03494 401 Pfam Myb-like DNA-binding domain 100 144 IPR001005 -
Vimu11g03494 401 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Vimu11g03494 401 CDD SANT 49 94 IPR001005 -
Vimu11g03494 401 SUPERFAMILY Homeodomain-like 44 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03494 Vimu-Chr11 56261457 56262869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03494 34 401 MYB Transcription Factor Family AT4G21440 55.497 2.76e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g03494 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03494 K09422 - gmx:100808310 496.893