LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g03488	ATGACCAACATAACCGCGAAGTACCAGCTCCCGAACGAGGATCTGGACGCGTTAATCTCGGTCACGACGGATGAAGACGTGGAGAACATGATGGACGAGTACGACCGCGTGGCACAGAATCAGAACCCGCGATCGGCGCGGCTTCGGCTCTTCCTCTTCCCCGAAGGGGAAGACTCTCGAACCAGTAGCATCAGCTCGCTATTGAACGGCTCAGCCAAACGCGAGAACTGGTTCCTCGACGCACTAAACGGTGGCGTTTCGGGTCTCGAGCGTGGCCGCTCTGAAGCCTCTTCCATGGTCTCGGAAGTACCCGATTACCTCTTCGGACTAGACAACTCCGACGACACACACCAACGCGACCCACGACCCAAGGACCGACCCGTTCTCCAAGACAACGTTTCCGTTTCGGATCCGGGTTCTCCTGCCCCGGTTGTTTCCTCACCGTACTGTTCGACCTCATCAGCGCCCTGCGTTCCTTCTCTTCCGAACCTTCCTCCAGTAAAGACTAAACTTTCAAACTCAGTTGCTGATTCGGACCCCAAGGAAAATCAAATGGAACCTGAAACGGAACCTCAACCCAACCTCAACCAAAACCTCTACCCGGGTAACCCTGTAGTCCACTACCCCCAAGAATCTGCTTATTCTGCTCATACAGTAAACCCGGTTCCTGTTTTCTATGTTCCCGGTCCGGTTCGACCTGGAACTGTGCCGGTTACTATGCAGCAGACACCTTACCCCTACGTTCAACAACCATACCATGCAATGGTGCCATCTCAGGTTCCCATCGGCTACCATCATTTGATTCCGGGTTCGGGTCAAGTATATGGTGCAGGCGTGAGGCAGGTGAGTCCACTGCAACCTTACAATCCTTCCGCCGCAGTGGTTCACGACGGTTTGAAACAGCACGTGTATCATGCCGTGCCGAATTCCGGTCCGGTTCCCGTTCACCAGATGATGCCCATGACCGGTGCTGATGAACTGCAGAGAGGTGGAGCGGAGTACGTGGTGGGTCGGGGCCCCAATTCGCTGAATAACTGA	1038	0.5491	MTNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAQNQNPRSARLRLFLFPEGEDSRTSSISSLLNGSAKRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSDDTHQRDPRPKDRPVLQDNVSVSDPGSPAPVVSSPYCSTSSAPCVPSLPNLPPVKTKLSNSVADSDPKENQMEPETEPQPNLNQNLYPGNPVVHYPQESAYSAHTVNPVPVFYVPGPVRPGTVPVTMQQTPYPYVQQPYHAMVPSQVPIGYHHLIPGSGQVYGAGVRQVSPLQPYNPSAAVVHDGLKQHVYHAVPNSGPVPVHQMMPMTGADELQRGGAEYVVGRGPNSLNN	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g03488	345	MobiDBLite	consensus disorder prediction	166	180	-	-
	Vimu11g03488	345	SUPERFAMILY	CAD & PB1 domains	6	62	-	-
	Vimu11g03488	345	MobiDBLite	consensus disorder prediction	187	201	-	-
	Vimu11g03488	345	MobiDBLite	consensus disorder prediction	133	158	-	-
	Vimu11g03488	345	MobiDBLite	consensus disorder prediction	106	201	-	-
	Vimu11g03488	345	MobiDBLite	consensus disorder prediction	112	127	-	-
	Vimu11g03488	345	PANTHER	OS05G0427100 PROTEIN-RELATED	4	276	-	-
	Vimu11g03488	345	Pfam	PB1 domain	5	54	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g03488	Vimu-Chr11	56200307	56201344	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g03488	4	97	MAP Kinase Kinase Kinase	AT3G46920	36.842	1.96e-12	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g03488	-		-	gmx:100803004	553.132