Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03479 ATGGAGCTAAGGAGGAAGGTGATGGAAGGTGTTCTTAAGAACAGCAAGAATCCAAAATTGGCGTGGCAATTGGTGAAGCGCGTTATGTCTTCCCCTTCCTCTGCCTCTTCCATCGCCGATCACACTCAGCACCTTGTCACCATCACAACACGCATCCTTGCAGGCGCCAACATGCACCTTCAACTCCACGACCTCCACAAACTCCTCCTAGCCTCTCAGCCGCACCACATTGCGCAGCCTTCCATCCTTTCCATGGTTCGAGTCCTCGCCCAATGGGGTCACATCGACGAGGCCCTCACACACTTCAAATCCTTCAGAGCGCAATTCCCCTCATCCCCTCCCTCCCTCTCCTTCTACAACCTCCTCCTCCGCTCCTCCATCCAACACAACTACCCCAACCTCGTCACGTGGCTGTACACTGACATGATCGCCGCACGTGTCACCCCTCAGACCTACACCTTCAACCTCCTCATCCAGTCTCTCTGCGACTCTCGCGCCTTCGACCACGCCCTCCAACTGTTCGACAAAATGTCCCAGAAAGGATGCCACCCCAACGAGTTCACTCTTGGGATTCTGGTCCGTGGCTTGTGCCGCGCTGGTCGCGTCAAACAAGCCTTGGAGCTTGTTAACAATAGTTATAGCAATAACAATGGCAATGACAATAACAGTTGTCGTATTGCTAACAGGGTCGTGTACAATACTCTTGTTTCTGCATTTTGTAAACAGGAGCTAAATGATGAAGCTGAGAAACTTGTTGAGAGGATGAGCGAGGTAGGGTTGTTGCCTGATGTTGTTACTTTTAATTCGAGGATTTCTGCGCTTTGTAGAGCTGGAAAGGTTCTTGAGGCATCGAGGATTTTCAGAGATATGCAGATGGACGTGGAATTGGGGCTTCCTAGACCCAATACTGTAACTTATAATTTGATGCTTAAGGGGTTCTGTAAGCATGGGATGATCGAGGATGCAAGGGGTTTGGTTGACACTATGAAGAAAGCTGGGAATTTTGTCTCTTTGGAAAGTTATAACATATGGTTGTTGGGTTTGCTTAGGAATGGGGAGCTATTGGAGGCTCGGTTAGTGCTTGATGAAATGGCGGCAAAAGGTATTGAACCGAATGCTTACACGTATAACATTATGGTGGATGGGTTATGCAGAAACCATATGCTGTCAGATGCAAGAGGGCTGATGGATGTGAAGATGAGCAATGGGGTTTACCCAGATACAGTTACGTATAGTACACTCCTGCATGGATACTGCAGTAAAGGGAAGGTTTTCGAAGCTAAACGTGTTCTTCATGAAATGATAAAGAATGGCTGTCAGCCGAATACTTATACCTGCAACACGTTGCTGCATAGCCTGTGGAAAAAGGGGAGAACGCAAGAGGCAGAGGAAATGCTGCAAAAGATGAATGAAAAATCCTATCAACCGGATACTGTAACCTGCAATATTGTGGTCAATGGTCTCTCTAGAATTGGAGAATTGGACAGGGCAATGGAAATTGTAAGTGAGATGTGGACTAATGGACCAACATCCCTTGATAAAGGAAACACATTTGCCACTCTAATTAATTCAATCACTATTGTATCAAACTGCTTGCCTGATGGAATCACATACACAACTTTAATTAATGGACTTTGCAAAGCTGGGAGGCTGGAGGAAGCCAAAAAAAAGTTTATTGAAATGTTGGCAAAAAACTTGCACCCTGATTCTGTAACTTATGATACATTCATATGGAGTTTCTGTAGACAAGGAAAGATATCATCGGCTTTTCGTGTCTTGAAGGATATGGAGAGAAATGGTTGTAGCAAGACTCTTCAAACTTATAATGCCTTGATCCTGGGTTTAGGAAGTAAAAAGCAAATATTTGAAATATATGGATTGATGGATGAGATGAAAGAAAATGGGATAAGTCCAGATATTTTCACTTATAATAATATAATCAGTTGCCTTTGCGAAGGAGGAAAAGCAAATGATGCCATTTCGCTTTTACATGAAATGTTGGATAAGGGCATATCTCCTAATTTATCTTCATTCAAAATATTGATTAAAGCCCTCTGTAAGTCTAGTGATTTTAAAGTAGCTTGTGAACTATTTGAGGTAGCTTTGAGTATATGCAGCCACAAAGAAGCCTTGTACAGTTTGTTGTTCAATGAATTACTAGCTGGAGGACAACTCTCTGAAGCAAAGGAGCTATTTGAAGCGTCGTTAGATAGATATCTCACATTGAAGAATTTCATGTATAAAGATTTGATTGAAAGGCTTTGCCAGGATGAAAGGTTGGCAGATGCTAGTAGCCTTCTTCATAAATTGATTGATAAGGGATATGGATTCGATCATGCATCATTCATGCCAGTGATTGATGGCTTAAGTAAAAGAGGAAACAAACAGAAAGCGGATGAACTAGCAAAGAGAATGATGGAATTGGCATTAGAAGATAGACCTGTCGATGGGACTTATCAAAACAGAAACAGAGTCATTCCTGGAAAACTACATAACGATGGAGGAACTGACTGGAAGGACATAGTTAACAGGGATGATGGCAGTGGAATTGCACTGAAAACTCTTAAGCGTGTGCAGAAAGGCTGGGGTCAAGGAAGTATATCTAGTTTGCAGTCTCAGCCAAATGATTTTCTTGATTACTATGATGGCAGTGTGGGAGAGGTTTTGGAAGCCGAGGCGTACTTTAACAGTCTGGAAGATAATAGTATTGAAATCTATTCTGCCATGGTTAAAGGCTATTCAAAAGTTACAGCTTCACTGTGCCAGACTGAAGGAAATAAGACATCATTGGAAGTTTCTTCAATCTTGAGAGATATGGAGCAAATGGAAATAAATCCGGATGTTGTTTGTTACACTGTGTTGATTGATGGACACATGAAGACAGAGAACATTCAAGAAGCAGTAAGCCTATTTTGTAAAATGATTGACAGTGGACTAGAACCAGATACTGTAACATGCACTGCTCTGTTCTCTGGCTTACTTACCAGAGGGCACATAAAAAAAGGCATTATACAGCTTAATGAAATGTATTCCAAGGGAATGACACCAGATGCGTGTGTCATCTCAGCTTTAAAAGCGTGGTATTGTAAAAGCTACAAGGGTGCATTTTCATTAGAAGTTGAAAAGAGAAGGACTGTGCTGAAATTGCCTATTTGTTACCAGGTCATTGCAGGTATGTTTGGATACCCTTTATACAACGAGAAGAATCAGAACATGAGAAAGAGGTGTGGCAAAGCTTTGAGAATTGAACCGATACCTTCGTGCCGGGTATGTCCCTACCAATTAATGCTGGAAGGAATTTTGATTTTGGATGGGGAAAAAAGGAGGTGGAGAACTGGGTATTGGGATGGTAGAGTATTCACTGGTGTCTCTAATATGACAGGAAGCTCTCATTTTGGTTTTAAACTTAATGGGAATCAGTTTACATATACATGGAATGAACCTGAAAAGGTGAGGTTTCAGATAACCTGGGATGGGTTTGAAAAGAAGTTTATATCGAATGAAGATGAAACGCAATGGAATAATACACAACACGAGCCTTATAACAAGTGTGAGCATTATAATTTTTGTGGCAACTTTGCAGTGTGTGATATCTCTAAGGCATCTGTTTGTAGTTGCTTGCAAGGGTTTCAACAAAGGGAATGGAGTGAGTGGAATGGGGAAAATTCAGGGGGTTGTAAGAGGAGGACTCCACTGAAGGCTGAGAGAAATAGTTCTGGAACAGAGGTTAATGTTGGTGAGGATAGTTTTTTCGTTCAAAGGTGTACAAAGTTGCCAGATTTTGCATGTTTGGAGAGTCCTTCTAACGATGAGGAATGCCAGCGGTTTTGTCTGCAGAATAGTTCTTGTACTGCGTATTCATATACAATTGGAATTGGTTGCATGATTTGGTATGTGGATGTTCAACACACCGAAAATGATATTGGAAGTGTACTCAACATCCGTCTTGCTGATTCTGAGTTAGATTTATCGACAGAATTTTCAGGATCAACTGAGTTAGGTTTGGAAGGGAATAAGGCAGAACTTCCATTGTTCACTTTGAGCTTCCTTGGGAAGCTTCCAGGAGGAGAGGAAATAGCTTTTAAGAGGCTTTCAAGAAAGTCTAGTCAAGGATTAGAGGAGTTCAAGGATGGAATGATTCTAATAGCCAAACTACAACATAGAAATCTGGGAGAAGAAAAAATGCTTGTTTACGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCAGTGAAGAAAACACAACTAGACTGGACAAAGCGCTTTGAAATAATTGAAGGCATTGCAAGAGGGCTACTTTACCTGCACCAGGATTCAAGACTACGAATAATTCATCGGGATCTTAGAGCAAGCAACATTTTATTAGATGAAAGCATGCATCCAAAAATTTCAGACTTTGGCTTAGCCAAAATATTTGGAGGAAACCAAAATGAAGCAAGCACAAACAGAGTGACTACTAATCTCTATATCTTTGATGCAGTGGCTATATGTCGTCGGAATATGCAATGGAATACTAGTTTTTGCAACACAGAAGATTCAAGTCTCATAGGATATGCCTGGCACATGTGGAGTGAGCAGAGAGTAATGGAGCTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCATTGAGATTCATACACATAGCAATGTTATGTGTGCAAGACTCAGCATCTCGCACACCAAACATGGCCCCTGTATTGTTAATGCTGGCAAGTGAAGACACAACTCTTCCTCTGCCTAAACAACCTTTGGTCACTGCTTCCATGAGGAAATTTGATGATGGAGATCAATCTTATAGTGAAGGCCTTGACGTGTCAAGATTTGACAGTTAG 4851 0.4166 MELRRKVMEGVLKNSKNPKLAWQLVKRVMSSPSSASSIADHTQHLVTITTRILAGANMHLQLHDLHKLLLASQPHHIAQPSILSMVRVLAQWGHIDEALTHFKSFRAQFPSSPPSLSFYNLLLRSSIQHNYPNLVTWLYTDMIAARVTPQTYTFNLLIQSLCDSRAFDHALQLFDKMSQKGCHPNEFTLGILVRGLCRAGRVKQALELVNNSYSNNNGNDNNSCRIANRVVYNTLVSAFCKQELNDEAEKLVERMSEVGLLPDVVTFNSRISALCRAGKVLEASRIFRDMQMDVELGLPRPNTVTYNLMLKGFCKHGMIEDARGLVDTMKKAGNFVSLESYNIWLLGLLRNGELLEARLVLDEMAAKGIEPNAYTYNIMVDGLCRNHMLSDARGLMDVKMSNGVYPDTVTYSTLLHGYCSKGKVFEAKRVLHEMIKNGCQPNTYTCNTLLHSLWKKGRTQEAEEMLQKMNEKSYQPDTVTCNIVVNGLSRIGELDRAMEIVSEMWTNGPTSLDKGNTFATLINSITIVSNCLPDGITYTTLINGLCKAGRLEEAKKKFIEMLAKNLHPDSVTYDTFIWSFCRQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSKKQIFEIYGLMDEMKENGISPDIFTYNNIISCLCEGGKANDAISLLHEMLDKGISPNLSSFKILIKALCKSSDFKVACELFEVALSICSHKEALYSLLFNELLAGGQLSEAKELFEASLDRYLTLKNFMYKDLIERLCQDERLADASSLLHKLIDKGYGFDHASFMPVIDGLSKRGNKQKADELAKRMMELALEDRPVDGTYQNRNRVIPGKLHNDGGTDWKDIVNRDDGSGIALKTLKRVQKGWGQGSISSLQSQPNDFLDYYDGSVGEVLEAEAYFNSLEDNSIEIYSAMVKGYSKVTASLCQTEGNKTSLEVSSILRDMEQMEINPDVVCYTVLIDGHMKTENIQEAVSLFCKMIDSGLEPDTVTCTALFSGLLTRGHIKKGIIQLNEMYSKGMTPDACVISALKAWYCKSYKGAFSLEVEKRRTVLKLPICYQVIAGMFGYPLYNEKNQNMRKRCGKALRIEPIPSCRVCPYQLMLEGILILDGEKRRWRTGYWDGRVFTGVSNMTGSSHFGFKLNGNQFTYTWNEPEKVRFQITWDGFEKKFISNEDETQWNNTQHEPYNKCEHYNFCGNFAVCDISKASVCSCLQGFQQREWSEWNGENSGGCKRRTPLKAERNSSGTEVNVGEDSFFVQRCTKLPDFACLESPSNDEECQRFCLQNSSCTAYSYTIGIGCMIWYVDVQHTENDIGSVLNIRLADSELDLSTEFSGSTELGLEGNKAELPLFTLSFLGKLPGGEEIAFKRLSRKSSQGLEEFKDGMILIAKLQHRNLGEEKMLVYEYLPNKSLDCFLFDPVKKTQLDWTKRFEIIEGIARGLLYLHQDSRLRIIHRDLRASNILLDESMHPKISDFGLAKIFGGNQNEASTNRVTTNLYIFDAVAICRRNMQWNTSFCNTEDSSLIGYAWHMWSEQRVMELLDSSIGDSTPKSKALRFIHIAMLCVQDSASRTPNMAPVLLMLASEDTTLPLPKQPLVTASMRKFDDGDQSYSEGLDVSRFDS 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03479 1616 SMART ntp_6 1245 1316 IPR003609 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 638 687 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 340 385 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 946 993 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 149 198 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 228 276 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 406 453 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat family 568 615 IPR002885 -
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 525 620 IPR011990 GO:0005515
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 368 455 IPR011990 GO:0005515
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 456 524 IPR011990 GO:0005515
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 221 295 IPR011990 GO:0005515
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 982 1016 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Vimu11g03479 1616 SMART serkin_6 1344 1576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Vimu11g03479 1616 PANTHER ATPASE EXPRESSION PROTEIN 3 301 675 - -
Vimu11g03479 1616 Pfam S-locus glycoprotein domain 1110 1212 IPR000858 GO:0048544
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 883 1096 IPR011990 GO:0005515
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vimu11g03479 1616 Gene3D Phosphorylase Kinase; domain 1 1316 1400 - -
Vimu11g03479 1616 SUPERFAMILY Protein kinase-like (PK-like) 1350 1598 IPR011009 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 947 981 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Protein kinase domain profile. 1284 1616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03479 1616 Gene3D Transferase(Phosphotransferase) domain 1 1401 1500 - -
Vimu11g03479 1616 Gene3D Transferase(Phosphotransferase) domain 1 1501 1584 - -
Vimu11g03479 1616 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1446 1458 IPR008266 GO:0004672|GO:0006468
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 23 217 IPR011990 GO:0005515
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 296 367 IPR011990 GO:0005515
Vimu11g03479 1616 ProSiteProfiles PAN/Apple domain profile. 1245 1317 IPR003609 -
Vimu11g03479 1616 Pfam PPR repeat 301 330 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat 473 504 IPR002885 -
Vimu11g03479 1616 Pfam PPR repeat 530 561 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Vimu11g03479 1616 Pfam Protein tyrosine and serine/threonine kinase 1359 1482 IPR001245 GO:0004672|GO:0006468
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 293 IPR002885 -
Vimu11g03479 1616 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 1401 1492 - -
Vimu11g03479 1616 Pfam PAN-like domain 1246 1301 IPR003609 -
Vimu11g03479 1616 CDD PAN_AP_plant 1244 1317 - -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 949 983 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 479 508 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 152 186 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 641 674 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 265 291 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 409 443 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 374 408 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 607 640 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 304 333 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 536 569 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 571 602 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 444 478 IPR002885 -
Vimu11g03479 1616 NCBIfam pentatricopeptide repeat 230 264 IPR002885 -
Vimu11g03479 1616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 705 826 IPR011990 GO:0005515
Vimu11g03479 1616 Gene3D Tetratricopeptide repeat domain 621 704 IPR011990 GO:0005515
Vimu11g03479 1616 SMART tyrkin_6 1345 1535 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03479 Vimu-Chr11 56117624 56125166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03479 1299 1607 Receptor kinase-like Gene Family AT4G11530 42.941 8.78e-77 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu11g03479 PK_Tyr_Ser-Thr 6.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03479 - - pvu:PHAVU_002G220400g 1609.73