Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03474 ATGCTAAGCTCGTTCATTCTACTCTTCACCTTCCATTTTTGTTCTTGTTCTGATACCATATCTGCTGACAAAGCCATCAGAGATGGCGAGCTTCTTGTTTCCAAAGGCAAAACCTTTGCTCTTGGATTTTTCAGTCCAGGAAAATCCAAATCCCGCTATGTGGGAATATGGTTCAACAATGTGAAAGAACAAACTGTTGTTTGGGTTGCAAACAGAGACACTCCCATCAATGACACCTCTGGGGTTCTCTCAATCAACCCAGATGGAAACCTAGTCCTCCACCACAACTATAGCACTAGTCCCATTTGGTCTACCAGTGTTTCACTCCCACAATCAAATAGCACTGCCACTAACGTCATAGCTCAACTCTCAGACCTAGCAAACCTTGTTCTGATTCTTAACGACACCAAAACTCTCATCTGGCAAAGCTTTGATCATCCCACAGACACCTTGATTCCATATCTAAGAATTGGTTTCGACAGAAGAGCTAACCAGAGTTGGATCCTCCAATCTTGGAAGACAGATGATGACCCCGGAACGGGTTCTTACACATTGGAATTGAGCAGCACTGGGAAGGCACAGTTGTTCTTGTATCACCAGAACCTTCCCCTGTGGCGAGGTGGGTCATGGAACGGTGAGTTATTTATGGGTGTACCCAACATGAAAAGAGATTTGCTTACTTTTAATGTTTCTTTTACTGAAGAAGAAAACCTCGTAGCACTCTCGTTTAACCCGCGTGATAAGTCCTTGATCACTTGGGTGGTGGTTCAGCAATCAGGTTTCTTTAACGTATTCACTTGGGATAACCAAAAGAATCAGTGGAACAGGTACTGGTCTGTGCCAATAAACCAATGTGATAACTATGGAACCTGTGGATCAAACGGTAATTGTGACCCTTTGAACTTTGAGGAATTTCGGTGTTCTTGTCTACCTGGGTTTGAACCCAAATCCCCGCACGAGTGGTACGATAACAGAGATGGGTCAGAAGGGTGTGTGAGGAAGAAAGGTGTATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAAATTGAAGGCTTAAAGCTCCCTGATACCTCTGAGGCAACTGCTAAAGAGGGTTGGAGTTTGGATGACTGTGAGAAGGATTGCTTGAGAAACTGCTCTTGCACTGCTTATGCAGTTCTTGATGTGAGGAATGGTGGAAGTGGGTGTTTGGCATGGCATGGAAATTTAACAGACATACAAAAACTGAGTGATCAAGGTCAAGATTTATATGTCCGTGTTGATGCAGAAGAACTAGCAAATTATAACAAAAAGACAAAAGGATTACGCGGTAAAACGAGGATTGCTGTAATTGTGACTGCTTCTGCATCTTATCTCAAGGCATTTATAATTTCAGATAAAGTGATGCATCATTTAAACCAACTTTCCCCTGGACATGACAACGGTATCCAAAGCAGCACGCCTAGAAATCTTCCATTTTTCAGCCTTAAAGTGATAATGGAAGCCACAAGAAATTTTGGTGATGAGAACAAGGTTGGGCAAGGTGGATTTGGTTCTGTCTACAAGGGCTGCCTAGCCAATGGACAAGAGATAGCAGTGAAAAGATTGTCTGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAAATGAAGTTACATTGTTAGTTAAACTTCAACACAGAAATCTAGTGAGGCTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGTTAGTTTATGAATATTTACCAAATAAAAGCTTGGACTTCTTCATATTTGAGTTTGAACGCTTAAATTCAGATGAAAAGCGAAGGTCATCACTGACTTGGGATAAGCGGTTTGAAATCATTTTGGGAATTGCTCGAGGTGTTCTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCAAGCAATGTGCTCCTTGATGCCGCAATGAATCCTAAAATATCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGGACGAGAAGAGTGGTCGGAACATAG 2016 0.4172 MLSSFILLFTFHFCSCSDTISADKAIRDGELLVSKGKTFALGFFSPGKSKSRYVGIWFNNVKEQTVVWVANRDTPINDTSGVLSINPDGNLVLHHNYSTSPIWSTSVSLPQSNSTATNVIAQLSDLANLVLILNDTKTLIWQSFDHPTDTLIPYLRIGFDRRANQSWILQSWKTDDDPGTGSYTLELSSTGKAQLFLYHQNLPLWRGGSWNGELFMGVPNMKRDLLTFNVSFTEEENLVALSFNPRDKSLITWVVVQQSGFFNVFTWDNQKNQWNRYWSVPINQCDNYGTCGSNGNCDPLNFEEFRCSCLPGFEPKSPHEWYDNRDGSEGCVRKKGVSVCGNGEGFVKIEGLKLPDTSEATAKEGWSLDDCEKDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLTDIQKLSDQGQDLYVRVDAEELANYNKKTKGLRGKTRIAVIVTASASYLKAFIISDKVMHHLNQLSPGHDNGIQSSTPRNLPFFSLKVIMEATRNFGDENKVGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFEFERLNSDEKRRSSLTWDKRFEIILGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQARTRRVVGT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03474 671 Pfam S-locus glycoprotein domain 205 317 IPR000858 GO:0048544
Vimu11g03474 671 ProSiteProfiles Bulb-type lectin domain profile. 17 144 IPR001480 -
Vimu11g03474 671 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Vimu11g03474 671 Pfam Protein tyrosine and serine/threonine kinase 503 660 IPR001245 GO:0004672|GO:0006468
Vimu11g03474 671 CDD EGF_CA 282 317 - -
Vimu11g03474 671 CDD B_lectin 26 147 IPR001480 -
Vimu11g03474 671 ProSiteProfiles Protein kinase domain profile. 499 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03474 671 SMART blect_4 23 147 IPR001480 -
Vimu11g03474 671 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 178 IPR036426 -
Vimu11g03474 671 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Vimu11g03474 671 Gene3D - 12 145 IPR036426 -
Vimu11g03474 671 Gene3D Transferase(Phosphotransferase) domain 1 576 671 - -
Vimu11g03474 671 Gene3D Phosphorylase Kinase; domain 1 463 574 - -
Vimu11g03474 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vimu11g03474 671 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 575 671 - -
Vimu11g03474 671 ProSiteProfiles EGF-like domain profile. 281 319 IPR000742 -
Vimu11g03474 671 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 661 - -
Vimu11g03474 671 Gene3D Hepatocyte Growth Factor 338 419 - -
Vimu11g03474 671 Pfam D-mannose binding lectin 65 173 IPR001480 -
Vimu11g03474 671 SUPERFAMILY Protein kinase-like (PK-like) 473 671 IPR011009 -
Vimu11g03474 671 SMART serkin_6 499 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03474 671 SMART ntp_6 341 420 IPR003609 -
Vimu11g03474 671 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Vimu11g03474 671 CDD PAN_AP_plant 341 420 - -
Vimu11g03474 671 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 12 144 - -
Vimu11g03474 671 Pfam PAN-like domain 340 406 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03474 Vimu-Chr11 56048038 56051330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03474 425 671 Receptor kinase-like Gene Family AT4G04500 53.968 1.64e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu11g03474 PK_Tyr_Ser-Thr 2.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03474 - - mtr:11411809 1001.89