Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03473 ATGGCACCAGAATATGCGATGGATGGACGGTATTCAACAAAATCTGATGTCTTTAGTTTCGGGGTCTTACTCTTGGAGATTATTGCTGGCAAGAGAAACACAGATTCTGAAAGGGGAAGATCCTCCCGAAATTTAATTGGACATGTTTGGATAGTGTGGACAGAAGGAAGGGCGTTGGATATAGTTGATTCAACACTGGGTGAGTCTTATTCTCCAGCTTTTGTTCTGAGGTGCATTCAGATTGGTCTATTGTGCGTGCAAGAAAATGCAGCCAATAGACCTTCATTGTCAGAAGTTGTTTTCATGCTAGGCAATGAAACAAGTCTTTCCCGTCCCAATAAGCCAGCATTTTTACTCAATGGAGATTTGGCGGAGTCATCATCAGGTGGGGGATCTTCAATAAATGAAGTAACAGCAACTACTGTCAGTGCTCGTTAG 438 0.4269 MAPEYAMDGRYSTKSDVFSFGVLLLEIIAGKRNTDSERGRSSRNLIGHVWIVWTEGRALDIVDSTLGESYSPAFVLRCIQIGLLCVQENAANRPSLSEVVFMLGNETSLSRPNKPAFLLNGDLAESSSGGGSSINEVTATTVSAR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03473 145 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03473 145 Pfam Protein tyrosine and serine/threonine kinase 1 100 IPR001245 GO:0004672|GO:0006468
Vimu11g03473 145 SUPERFAMILY Protein kinase-like (PK-like) 1 109 IPR011009 -
Vimu11g03473 145 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Vimu11g03473 145 MobiDBLite consensus disorder prediction 125 145 - -
Vimu11g03473 145 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03473 Vimu-Chr11 56047424 56047954 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03473 1 145 Receptor kinase-like Gene Family AT4G23140 41.935 7.56e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu11g03473 PK_Tyr_Ser-Thr 2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03473 - - tpra:123918163 213.001