Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03472 ATGGCAGTGGTTCTGCCAGCGGTTCCCACTAGAACTGCAGAAAAGAGTGACGTTTTAGGTACGGCCTTTGTTGGCTGTGCATTCAGCAGCCTCGACGACGATTCAAAGACAAAAGGAATGATTCTTACCAAGTGTAAGAGTCCTCAATCCAACACTAATCTTCAAGTACGAAGTAGGATTTCTCCTCATAAAAAGCAAGAGAGGAACTCCATGCACCATGCTAAAACTCTTTCAAGCTTTGTCATGAGTCAATACATCTACCTGCTCTGCGCTAAGATTCTACTATTCAGCTTCTCCTTTTGCTCTTCTTCTGATACCATAGTTGCTGACAAAGGCATCAGAGATGGAGAGCTTCTTGTTTCAAAAGCCCAAACATTTGCTCTTGGATTCTTCAGTCCAGGCAAGTTCAACTTCCGCTATGTGGGAATATGGTACAACAATGTGCAAGAACAAACTGTTGCTTGGGTTGCAAACAGAAACACTCCAATCAATGACACTTCTGGGTTTCTCTCAATCAACCCAGATGGAAACCTAGTACTCCAACACAAATATAGCACCTTTCCAGTTTGGTCTACCAATATTTCAACTTCTCAATCAAACAGCACCAAAGTCATGGCTAAACTCACTGATACAGGTAATCTTGTTCTGATTCTTGACAACACCAAAGCTGTCATCTGGCAAAGCTTTGATCATCCCACAGATACCTTTCTTCAATATCTAAGGGTTGGTTTCGACAGAAGAACAAACCAGAGTTGGTTCCTCCAATCTTGGAAGACAGATGATGATCCTGGAGCAGGTTCTTACACATTGAAAATAAGCAGCACTGGGAAACCCCAGATGATCTTTTACCATCAGAACCTTCCCTTTTGGCGAGGCGGATCGTGGAACGGAGAATTATTTATGGGTATGCCCGACATGAAGAGAGATATGTATACTTTTAACGTTTCTTATATAGAAGATGATAACCAGGCAGTGCTCTCATATAGCATGGTTGATCAGTCCTTGATCTCTAGGGTAGTAGTTCAACCATCAGGTTTCTTTCAAGTATTCACTTGGGATGACCAAAAGAGTCAATGGAATAGGTACTGGTCTGAACCAACAAATCAGTGTGATAACTATGGAACCTGTGGATCAAACGGTAATTGTGACCCTTTGAACTTTGAGGAATTTCGGTGTACTTGTCTACCTGGGTTTGAACCCAAATCCCCACATGAATGGTACAATAACAGAGATGGGTCAGAAGGGTGCGTGAGGAAGAAAGGTGTATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAAATTGAAGGCTTAAAGCTCCCTGATACCTCTGAGGCAACTGCCAAAGAGGGTTGGAGTTTGGATGAATGTGAGAAGGATTGCTTAAGAAACTGCTCTTGCACTGCTTATGCAGTTCTTGATGTGAGGAATGGTGGAAGTGGGTGCTTAGCATGGCATGGAAATTTAATAGACATACAAAAACTGAGTGATCAAGGCCAAGATTTATTTGTTCGAGTTGATGCAGTCGAACTAGATAAAGTGAGGCAACATTTAAACCAATTTTCCCCTGAAGACGACCACGATATCCCAAGCAACACACATCCAAATCTTCCCTTTTTCAGCCTTAAAGTAATAGTGGAAGCCACAAGAAATTTTGGTGACGAGAACAAGCTTGGGCAAGGTGGATTTGGTTCTGTCTACAAGGGCTGCCTAGCCAATGGACAAGAGATAGCAGTGAAAAGATTGTCTGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAAATGAAGTTACATTGTTAGTTAAACTTCAACACAGAAATCTAGTGAGGCTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGTTAGTTTATGAATATTTACCAAATAAAAGCTTGGACTTCTTCATATTTGAGTTTGAACGCTTAAATTCAGATGAAAAGCGAAGGTCATCACTGACTTGGGATAAGCGGTTTGAAATCATTTTGGGGATTGTTCGAGGCGTTCTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCAAGCAATGTGCTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTCGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGGACGAGAAGAGTGGTCGGAACATAG 2172 0.4148 MAVVLPAVPTRTAEKSDVLGTAFVGCAFSSLDDDSKTKGMILTKCKSPQSNTNLQVRSRISPHKKQERNSMHHAKTLSSFVMSQYIYLLCAKILLFSFSFCSSSDTIVADKGIRDGELLVSKAQTFALGFFSPGKFNFRYVGIWYNNVQEQTVAWVANRNTPINDTSGFLSINPDGNLVLQHKYSTFPVWSTNISTSQSNSTKVMAKLTDTGNLVLILDNTKAVIWQSFDHPTDTFLQYLRVGFDRRTNQSWFLQSWKTDDDPGAGSYTLKISSTGKPQMIFYHQNLPFWRGGSWNGELFMGMPDMKRDMYTFNVSYIEDDNQAVLSYSMVDQSLISRVVVQPSGFFQVFTWDDQKSQWNRYWSEPTNQCDNYGTCGSNGNCDPLNFEEFRCTCLPGFEPKSPHEWYNNRDGSEGCVRKKGVSVCGNGEGFVKIEGLKLPDTSEATAKEGWSLDECEKDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLIDIQKLSDQGQDLFVRVDAVELDKVRQHLNQFSPEDDHDIPSNTHPNLPFFSLKVIVEATRNFGDENKLGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKNEVTLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFEFERLNSDEKRRSSLTWDKRFEIILGIVRGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQARTRRVVGT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03472 723 Gene3D Phosphorylase Kinase; domain 1 512 626 - -
Vimu11g03472 723 Pfam Protein kinase domain 553 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03472 723 Gene3D Hepatocyte Growth Factor 423 503 - -
Vimu11g03472 723 SMART blect_4 110 232 IPR001480 -
Vimu11g03472 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Vimu11g03472 723 SMART serkin_6 551 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03472 723 CDD B_lectin 113 232 IPR001480 -
Vimu11g03472 723 Pfam PAN-like domain 425 491 IPR003609 -
Vimu11g03472 723 Pfam S-locus glycoprotein domain 290 402 IPR000858 GO:0048544
Vimu11g03472 723 CDD PAN_AP_plant 426 505 - -
Vimu11g03472 723 Gene3D - 100 230 IPR036426 -
Vimu11g03472 723 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 515 626 - -
Vimu11g03472 723 PIRSF SRK 76 528 IPR024171 GO:0004674
Vimu11g03472 723 PIRSF SRK 514 723 IPR024171 GO:0004674
Vimu11g03472 723 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 93 713 - -
Vimu11g03472 723 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 100 229 - -
Vimu11g03472 723 ProSitePatterns Protein kinases ATP-binding region signature. 557 579 IPR017441 GO:0005524
Vimu11g03472 723 Pfam D-mannose binding lectin 152 258 IPR001480 -
Vimu11g03472 723 CDD EGF_CA 368 402 - -
Vimu11g03472 723 ProSiteProfiles EGF-like domain profile. 366 404 IPR000742 -
Vimu11g03472 723 ProSiteProfiles PAN/Apple domain profile. 425 506 IPR003609 -
Vimu11g03472 723 SUPERFAMILY alpha-D-mannose-specific plant lectins 153 263 IPR036426 -
Vimu11g03472 723 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 627 723 - -
Vimu11g03472 723 ProSiteProfiles Bulb-type lectin domain profile. 104 229 IPR001480 -
Vimu11g03472 723 Gene3D Transferase(Phosphotransferase) domain 1 628 723 - -
Vimu11g03472 723 ProSiteProfiles Protein kinase domain profile. 551 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03472 723 SMART ntp_6 426 505 IPR003609 -
Vimu11g03472 723 SUPERFAMILY Protein kinase-like (PK-like) 528 723 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03472 Vimu-Chr11 56040650 56045764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03472 530 723 Receptor kinase-like Gene Family AT4G04500 64.433 3.80e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu11g03472 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03472 - - tpra:123914661 942.954