Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03471 ATGGAGACTGCAGTTATTAATACCGGTTACATGTCACCAGAATATGCAATGGATGGACGGTATTCAACAAAATCTGATGTCTTTAGTTTTGGGGTCTTACTCCTGGAGATTATTGCTGGCAAGAGAAATACAGATTGTGAAAAGGGAAGATCCTCCCCAAATTTAATTGGACATGTGTGGTTACTTTGGACAGAAGGAATGGCCTTGGACATAGTTGATTCAACACTGCCTCAGTCTTACTCTCCAGCTCTTGTTCTGAGGTGCATTCAAATTGGTCTATTGTGCGTTCAAGAAAATGCAGAGAATAGACCTTCCTTGTCAGAAGTTGCTTTTATGCTGAGCAATGAAACACCTCTTTCCCCACCCCAAAAGCCAGCATTTTTATTCCATGGAGACAGAGATCGGCCTGAGACATCAACATCAGGGGGAGGATCTTCAATAAATGAAGTAACAGTAACCACCATCATCGCCCGCTAG 477 0.4277 METAVINTGYMSPEYAMDGRYSTKSDVFSFGVLLLEIIAGKRNTDCEKGRSSPNLIGHVWLLWTEGMALDIVDSTLPQSYSPALVLRCIQIGLLCVQENAENRPSLSEVAFMLSNETPLSPPQKPAFLFHGDRDRPETSTSGGGSSINEVTVTTIIAR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03471 158 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03471 158 MobiDBLite consensus disorder prediction 131 158 - -
Vimu11g03471 158 SUPERFAMILY Protein kinase-like (PK-like) 3 129 IPR011009 -
Vimu11g03471 158 MobiDBLite consensus disorder prediction 138 158 - -
Vimu11g03471 158 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 154 - -
Vimu11g03471 158 Pfam Protein tyrosine and serine/threonine kinase 5 110 IPR001245 GO:0004672|GO:0006468
Vimu11g03471 158 Gene3D Transferase(Phosphotransferase) domain 1 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03471 Vimu-Chr11 56040021 56040627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03471 9 158 Receptor kinase-like Gene Family AT3G45860 43.750 4.30e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu11g03471 PK_Tyr_Ser-Thr 1.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03471 - - mtr:11429525 245.743