Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03466 ATGGCTGAAGAGTTTCAAGCTAGAATTTGTGGTGAAAACTGGTGGAGTAGTTCTATCGATTCAGCAAGAAGTGTATTTCCTGTAAGCTCATCACCGGTTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACGGCACTCGTCAAACAGATTTGAAGGCAACCAAGTGTTGTGTTGAAGAGACTAACAATTTGCTTTCCAACACCTACCTGGGTTTTTCTGATGCACACAAGTCACCCAAGACTGAATCACCCAGAGGAAGTGACAGCTTGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACATCAGACAATTGGAATCAACATCTATTAGTTCGATGTAATGGAAGGGCAGAGAGCAATTTTGATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGAATTGGAACCCGAAGAGCTTCTCCTGTACCGGTGGAGGAGATCAACAAATTGATAATTTCAAGCCATTGAACCAAGAATTTTCAGTAGATTACCAGAATCTATGTTCGTTAACCAGCAATGGGTTATCATCAAATCGTGATTTTGCAGTTGGATCAGCCTCATATGGTAACCCTTCAACGTTACGAAGCTTATATGAACCTGATCCTGATTCACAATTACCACAGCACTCACTTTTCACCAACCGTTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAACGCCAACATGGTCTAAAGTCACTACTTTTCTGAAGCCCACAACTATAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGAGTGCTTCCGCCGACGCACTTAACGACATAAGAGCAGGTACCTTTGCTTCATCACAATCACAATATCAATCGCCAACTTTCGATCAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTCAACAGTGAAGAAACAATAGATTCAGCAACAATGGCGAAGAAAGATGCTTGTGAACCAGCATTAAAGAGGCCAAGGATTGAAACTCCGTCCCCATTACCGACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTATGTTTTGAGTACCTCATATATGAAAAACGGAGCTCCCATCCAACCGCAGCAGTCCTCGCCAACGGCTCATACTCCGACACCACTTTTTCCTACGTCAACAACGATTACAACGGCCATCTCCGGTGCAACAATGTCGGTGGTGCTGTTTTTGCCTCTTTGGTATGGTTTCAACGAATTTTGGATCCATCGGAGACGGGCTCGTCATCGACAATAGGAACTTCCGATGATTCCACCTCTATGGCTAAGACATTGGTGTGTGATGATATGAAAGAGTCAGAAGGACCACATGAAGATTTAAAAAGTCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAACCAGTAGCAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCTCTCTTGAGGTCTCACCTTTTTGGTTTGATTCTGGAGATTGTATTGCGCGAAATGGAATTGTCCCGTGAGAGCAAGGTATATGCCATATGA 1707 0.4405 MAEEFQARICGENWWSSSIDSARSVFPVSSSPVASSPCSVAAHNDAGIYGTRQTDLKATKCCVEETNNLLSNTYLGFSDAHKSPKTESPRGSDSLLIDSTLQMMGFGLTSSTSDNWNQHLLVRCNGRAESNFDSVLQEETGIDSSNSQIRRNWNPKSFSCTGGGDQQIDNFKPLNQEFSVDYQNLCSLTSNGLSSNRDFAVGSASYGNPSTLRSLYEPDPDSQLPQHSLFTNRSMSYSSKASYGTPCTELTPTWSKVTTFLKPTTIAKQHPIGLHFSNNTTFWSASADALNDIRAGTFASSQSQYQSPTFDQEKPNCPSTLLNKLNSEETIDSATMAKKDACEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVCFEYLIYEKRSSHPTAAVLANGSYSDTTFSYVNNDYNGHLRCNNVGGAVFASLVWFQRILDPSETGSSSTIGTSDDSTSMAKTLVCDDMKESEGPHEDLKSRGLCLVPISSTFPVATETSSSAELWTPTFRGALLRSHLFGLILEIVLREMELSRESKVYAI 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03466 568 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 191 520 - -
Vimu11g03466 568 CDD bHLH_AtbHLH_like 357 406 IPR045239 -
Vimu11g03466 568 Gene3D - 361 416 IPR036638 GO:0046983
Vimu11g03466 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Vimu11g03466 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 412 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03466 Vimu-Chr11 55925093 55931266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03466 309 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21340 49.286 4.10e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03466 - - pvu:PHAVU_002G2196001 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03466 11 55925093 55931266 Vimu2g00542 2 3129683 3132184 PCT