Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03452 ATGGATGATGACACGAGTCATTCAGTTACTGCAAGCTTGAGGCGAAGGAAGCCCACAAAGGTTGATAAGAGCATTTCTCACAGAGCAGTGACCATTCCTGTTAATGTCAAAGGGTATGGTTCTAACTCAACATTATCAGAGGGTGAGGAGTCACCTAGAACATCTGAGTGGAGTAACATGACTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAGTGTCGGCATGCGGAATTCCCAAGTATTCTTACAAAGATATACAAAGGGCTACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCTCAGATGGCTACAGGTGGGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGGTTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCAGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTTGGAAAAAGTCGTGAGCCAATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCAAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATCATACCTCGCACATCAAATATCCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTGAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGCATAATCTTAACGATATGGCATCACTAGCATTCATATGTGTTAATGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTATATCAACTGCGAGTGCAGATATATTGGGAAGATTGCATAGCCGATGA 1221 0.4218 MDDDTSHSVTASLRRRKPTKVDKSISHRAVTIPVNVKGYGSNSTLSEGEESPRTSEWSNMTLWLENLRRSSAVSACGIPKYSYKDIQRATSNFTTIIGNGAFGPVYKAQMATGGTVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKSREPMNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDGQLNGKYDVHNLNDMASLAFICVNEVSQSRPTMCEIVQALSQLCKRNGKNLGRTSSAAALKDVCIEVDQIETKDFISTASADILGRLHSR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03452 406 CDD STKc_IRAK 97 359 - -
Vimu11g03452 406 FunFam calcium/calmodulin-regulated receptor-like kinase 1 167 377 - -
Vimu11g03452 406 ProSiteProfiles Protein kinase domain profile. 91 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03452 406 MobiDBLite consensus disorder prediction 1 26 - -
Vimu11g03452 406 Gene3D Transferase(Phosphotransferase) domain 1 167 380 - -
Vimu11g03452 406 MobiDBLite consensus disorder prediction 1 19 - -
Vimu11g03452 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vimu11g03452 406 Gene3D Phosphorylase Kinase; domain 1 57 166 - -
Vimu11g03452 406 SMART serkin_6 91 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03452 406 SUPERFAMILY Protein kinase-like (PK-like) 69 356 IPR011009 -
Vimu11g03452 406 PANTHER OS01G0750732 PROTEIN 32 365 - -
Vimu11g03452 406 Pfam Protein tyrosine and serine/threonine kinase 93 356 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03452 Vimu-Chr11 55705255 55710370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03452 81 359 Glycoside Hydrolase AT3G07070 43.003 2.14e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vimu11g03452 PK_Tyr_Ser-Thr 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03452 - - gmx:100816549 627.476