Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03442 ATGGAAGTTGACATGAGAACCATGGTTTTCAGTGTTCTTCTACTGATGTTGTGGTCATTGCAGACTTGCTTGGCCATGATCAGTGACGCAGTTAGCATTGAATTCAACGGAGGATCGGAAGAAACTGATCATAAAACATTGTTTGATACATCATTTTGGTACAGTTTTAGCATTGGTTATGTCTGTTCAGCCAGCGGGATCATCTTTGCTTTTATGTGCTTCTGTGTCCCTTGGGCGCAACTAAAGAACACCAAGAGAAAGTTCATTTCTTGCAACGTTGGTAGGCATGATATACGTGCAATAAAGGCAAACCAAGTTCCCAAACTACTACTCTATCTGTTGTTGCTCAAGAAAGGAAACCAAGAGATTTCTAGAGTACTGGACAAACTAAGATCGAGTATGAGCTTCATGGAACTGTGTAAAGCAACTGATTACTTCAACATGACCAATGTTATTGGGACAGGAAAGACAGGGATGGTGTACAAGGCCAAGCTTTCTAATGGCTCAAAAGTGGCAGTGAAGAGACTCTATGATTCTAAGTTATTCGAAACAAAATTCAAACATGGAAACTTAGTGGATCTTCTTGGGTTTTGCACAGAGAGAAAGCAGAGGATCCTTGTGTATGAACTCATGCCAAATGGTAAACTCTCTGATTGGTTACGACCTTTGCAAAATGAAGCTTTTCCATTGGATTGGCCAATAAGGCTTAAAATAGCACTTGGGTTGGCTAGAGGTTTATCCTTTCTCCATGATTGTTGCAATTGGAAGATACTCCACTTTGGTATAAGCTCGGAGCATGTTTTGCTTGATAAGAATTTTGAGCCCAAATTATGGAATTTCAGAAGTGCTGAACTCATGAAAGAAAACCAGAATAAGCTAGGAAAGAAGGATGTGTACGATTTTGGCATTGTTCTGATGGAGTTGATCACTGGAAAGAAGCACATTGAAATGAATGTAAATTTTAATGTCATTGATTCATCTTTATTAGGAAAAGGATTCGATGAGCAAATCTCTTGTCTGGTTAAGGTTGCAGTTGATTGCATTCAGTTGTCTCCACACCAGAGACCAAGTATGCTTGATGTGTATAGATACATAGAAAGGTTATGGGAAGGATACGAAACTGATGACTGA 1131 0.3935 MEVDMRTMVFSVLLLMLWSLQTCLAMISDAVSIEFNGGSEETDHKTLFDTSFWYSFSIGYVCSASGIIFAFMCFCVPWAQLKNTKRKFISCNVGRHDIRAIKANQVPKLLLYLLLLKKGNQEISRVLDKLRSSMSFMELCKATDYFNMTNVIGTGKTGMVYKAKLSNGSKVAVKRLYDSKLFETKFKHGNLVDLLGFCTERKQRILVYELMPNGKLSDWLRPLQNEAFPLDWPIRLKIALGLARGLSFLHDCCNWKILHFGISSEHVLLDKNFEPKLWNFRSAELMKENQNKLGKKDVYDFGIVLMELITGKKHIEMNVNFNVIDSSLLGKGFDEQISCLVKVAVDCIQLSPHQRPSMLDVYRYIERLWEGYETDD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03442 376 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Vimu11g03442 376 ProSiteProfiles Protein kinase domain profile. 146 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03442 376 Gene3D Phosphorylase Kinase; domain 1 114 210 - -
Vimu11g03442 376 Pfam Protein tyrosine and serine/threonine kinase 148 285 IPR001245 GO:0004672|GO:0006468
Vimu11g03442 376 Gene3D Transferase(Phosphotransferase) domain 1 211 294 - -
Vimu11g03442 376 SUPERFAMILY Protein kinase-like (PK-like) 128 365 IPR011009 -
Vimu11g03442 376 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 81 367 - -
Vimu11g03442 376 Gene3D Transferase(Phosphotransferase) domain 1 295 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03442 Vimu-Chr11 55575287 55576699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03442 135 376 Receptor kinase-like Gene Family AT4G33430 33.113 2.79e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu11g03442 PK_Tyr_Ser-Thr 1.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03442 - - vra:106766350 681.404