Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03439 ATGAAGTCGACGATGAGGTTCAACGAAGTGAGAGATGCAACAGATTGCTTTTCCATAGACAAGGCCATTGGGATGGGGAAAATTGGAATAATGTACGAGGGAAGGCTACCCAATGGTTGGAACCTTGCCATTAAGAGACTATTCGATTCGAAACAATACAAGAGAGAGTTTCTTTTGGAAATAAGAATTCTGGGAAAGTACAGACACAGAAATATAGTTCCCTTACTTGGGTTCTGCGTAGAAGGAAAAGAAAGGATTTTGGTGTACCAGTTCATGTCAAATGGAAGGCTTTCAAAATGGTTGCGTCCTTTAGAAGGTGAAGTTACATTGAAATGGCCTCAGAGGATCAAAATAGCAATTGGGGTAGCAAGAGGCTTATCCTGGATCCACCACATATGCAACTTGCATGTTGTGCATCTCAATATAAGTTCGGAGTGTATCTTGCTTGATAAGAATTTTGAACCAAAACTTTCCAACTTTGGAAAGGCAAAGTTTGTGAATCCCAACATTGAAGACGGCGCAAACACAATGTTTTATGTGAGTGATGGGAAGAAGGACGTGTATGACTTTGGTAGTTTGCTATTTGAGCTAATCACAGGGAAAACATTGAAGGAGTTGTCGTCTTCATTCAGTACTGCAACTAACCTATCTGGAAACCCTTCAAACTTTGTTAACGCAATTGATGAATCTCTGATGGGGGAAGGTTTGGAAAACGATGTGTACACTCTCATCAAAGTTGCATGCAAGTGTGTTCGACCTTCCGCAGATGAAAGGCCAACGATGCTTGAAGTTTACGACACTATGAAGGATATATGGGGTGAAGGACATTAA 831 0.4091 MKSTMRFNEVRDATDCFSIDKAIGMGKIGIMYEGRLPNGWNLAIKRLFDSKQYKREFLLEIRILGKYRHRNIVPLLGFCVEGKERILVYQFMSNGRLSKWLRPLEGEVTLKWPQRIKIAIGVARGLSWIHHICNLHVVHLNISSECILLDKNFEPKLSNFGKAKFVNPNIEDGANTMFYVSDGKKDVYDFGSLLFELITGKTLKELSSSFSTATNLSGNPSNFVNAIDESLMGEGLENDVYTLIKVACKCVRPSADERPTMLEVYDTMKDIWGEGH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03439 276 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Vimu11g03439 276 Pfam Protein tyrosine and serine/threonine kinase 18 266 IPR001245 GO:0004672|GO:0006468
Vimu11g03439 276 PIRSF ILK 36 274 - -
Vimu11g03439 276 ProSiteProfiles Protein kinase domain profile. 17 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03439 276 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Vimu11g03439 276 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 271 - -
Vimu11g03439 276 Gene3D Transferase(Phosphotransferase) domain 1 92 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03439 Vimu-Chr11 55571257 55572087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03439 5 271 Receptor kinase-like Gene Family AT5G07280 37.024 1.44e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vimu11g03439 PK_Tyr_Ser-Thr 3.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03439 - - gmx:102664092 489.96