Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03416 ATGCTCGTTCCAACGGGCCAGACTGTACTTCGGAAGACAAGTTTTTCACCGCCACACATGCTACTAGGGAATTGGCTAAAACCTTCTGAAGTCAATGGAAACTGTTGCATTTCACAAAAATTGGGAAACTGTGCTGATATTACTTCTAGCTCTTTTGATTGCAGAATTGGCTTTGTTATGGAGATCTCATCTATCAGAGAATTACCTGATATGAAGCAGCAGGAAATAATGGAGGATCCTAATTTGCTCCGTCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTTCTACTTTTGGAGAGACTTTTCAACAACATGCATTTACTTATCCAGACTTCAATCCCAAAGCTTCCATGGAAACTACACTAATGGACATTGAAAGACCAACAAAACATCATAAAAACATCAGCTGGAATCCCATAAAAAGTTCTGCTCAGACATCAGATTCACAATATGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACACAAGTCCATTGGGATTAGTGAAGGCCAATGAGGTGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTTTCTCTCAAGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGAATGGAAGACGTTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGCGTTTCATTGCCTTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCCACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAGGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTGTCCTATGATGTTAACAATTCTTCAGAATATGATGGTCCGTTATTTGACGAAACAATGCCCGAAATTGAAGCAAGATTTTGTGGGAGAAATGTCCTCATAAGAGTTCACTGTGAAAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAATCTCCACCTGAAAGTCACCAACAGCAATGCCATGGCATTTGGGAGATGCGCCATTGATATGACAATTATTGCTCAGATGGATATTGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTCCGCTCAGCTTTTACATCTTTCATGTGA 1212 0.4051 MLVPTGQTVLRKTSFSPPHMLLGNWLKPSEVNGNCCISQKLGNCADITSSSFDCRIGFVMEISSIRELPDMKQQEIMEDPNLLRQWHLSSIDDPNLLPIASTFGETFQQHAFTYPDFNPKASMETTLMDIERPTKHHKNISWNPIKSSAQTSDSQYVSFPNLLSFMDSNHTSPLGLVKANEVACPITNSTTSLDTFSQGILGNHNYLFKACQETKKNGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISHLKQLQEKVKALEEAQNMKKTVESVVIVKKSQLSYDVNNSSEYDGPLFDETMPEIEARFCGRNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTIIAQMDIEFCMGVKDVVRNLRSAFTSFM 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03416 403 Pfam Helix-loop-helix DNA-binding domain 228 274 IPR011598 GO:0046983
Vimu11g03416 403 PANTHER BHLH TRANSCRIPTION FACTOR 102 401 - -
Vimu11g03416 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Vimu11g03416 403 SMART finulus 230 279 IPR011598 GO:0046983
Vimu11g03416 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 288 IPR036638 GO:0046983
Vimu11g03416 403 Gene3D - 219 298 IPR036638 GO:0046983
Vimu11g03416 403 Coils Coil 263 293 - -
Vimu11g03416 403 CDD bHLH_AtNAI1_like 224 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03416 Vimu-Chr11 55361731 55364608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03416 224 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 54.645 8.21e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g03416 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03416 - - vun:114179595 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03416 11 55361731 55364608 Vimu11g03416 11 55361731 55364608 ECH
Vimu11g03416 11 55361731 55364608 Vimu2g00507 2 2895302 2898223 PCT