Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03412 ATGCAGGGTATACTCCACTCCAGATCTTTATTGGCAGCCACTGAAAGTTTAAAAGCTTTAGGTGGATTGGGTCTTCTTTCTCTTGGGGCAAAGTACATTCTCAGAAGAGTTTTTGAGGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACAATTGCTGGGATTTCTCTAGGCACACAGAATTTGGGCTTTAGTGACACGCTTGGGGCCTTTTTAGCTGGGGCTATTTTGGCAGAGACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCGTTTAGAGGCTTGCTCCTTGGATTGTTTTTCCTAACTACGGGAACTTCAATTGACATGCAGTTATCAAAATTTGTGGCTTCTTATAACAGGCTTGGGGTGCTTCCTCTTGAGCTCAACAAACTGCTCATAATTGTTGTTGTATTGTCGATGGCATTAACCCCATTTCTGAACGAAGCTGGAAGAAGGGCTGCTAGTTTTATAGAAGAAAAATCTGATTCTGAGAATAATGAGAAAGCTTTGGAGACTGTTAACTTCAATGCTCGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCCTGTCCAATCCATTAGCTTCAGGAGAAGGTGATGAAGTAGGATGGCCTTATGTGGCATTTGATGTGGACCCCAATGTAGTAAAGACAGCTAGAAAAATTGGCTTTCCTATTGTCTATGGGGATGGATCACGTCCTGATGTTCTTCAATCTGCTGGTGTCTCTTCTCCAAAAGCTTTTATGATTATGTACACTGGAAAGAAGAAGACAATCGATGCTGTTCAGAGGCTAAGATTGACATTTCCCGCGATTCCAATCTATGCCAGAGCTCGTGATCTAAAGCATCTATTAGATCTGAAAAAATCAGGTGCAACAGATGCCATTTTGGAAAATGCAGAGACTAGCTTGCACCTGGGTTCTAAGCTGCTGAAAGGCCTTGGTGTGATGTCTGATGATGTAGCATTTTTGAGTCAGCTTATACGAGATTCCATGGAGCTCCAAGCACAAGAAGCGGTCAGCCAACCCGAAAATCGTGGATTAGATATTATGCAACCCCTGCAGGGTGTGGAGGTGTCGGTTGTAAAAGGGGAAGCAGTCAGATTGGATATAAATAGAGTTCTTTTACTGTGTAGGGGGATATCTGAGTATTTTGTGGTAGAGTCAAGCATATTGTCTGCAGAGAGGGGTTATGCCCTCATCCAGGGAGGTTATGCTCCCATTCTACTTTTGATGAACAAAATAAAGCTATTTGAGGAGCACAAGGGTTGCCAGGGAGCAAAAAGGCTCAGAGGCGTGGCAATTGCTGGAGGCACGACAAACACCACGGAGCAAAAAGGCTTAGAAAGGGCAGTGGAGAGCAAAATATGCTTGGAGACATCATGGGGGCAGTTGTTTTGCTCATACCCCCTGAAGCTGGAGGTAGGGAGATGTGATCTAGCTCAAGCTTGGAAAAGTTGCCACCGAAAGCTGATCTTGCTTGGTGCGTTGTTCTTTTTCAATGGATTTGGCTCTTCTAAAGTGAGAAAGTTTAAAGTGAAAGCTTCTGACTTGAGGGAAGTACGTGTTCCTGCGGCAATAACTTCACCAGAATCTGAATTATCAGAAATGAATCAGAAAGATGAAGCTTCAGCAGTTAGAAATCAAAGGGAAGTAGATCCAGAAGAACAAAAACATGAACTTAGCGAAGCTGTGAAATTAGAAGGAAATGGTGTTTTACTTAGCAAACAAATTAGTGAAGAAAACGTTGAGGAGCCTTGA 1806 0.433 MQGILHSRSLLAATESLKALGGLGLLSLGAKYILRRVFEVVADTRSSEAFVALCLLTIAGISLGTQNLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDMQLSKFVASYNRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEEKSDSENNEKALETVNFNAREPVVILGFGQMGQVLANFLSNPLASGEGDEVGWPYVAFDVDPNVVKTARKIGFPIVYGDGSRPDVLQSAGVSSPKAFMIMYTGKKKTIDAVQRLRLTFPAIPIYARARDLKHLLDLKKSGATDAILENAETSLHLGSKLLKGLGVMSDDVAFLSQLIRDSMELQAQEAVSQPENRGLDIMQPLQGVEVSVVKGEAVRLDINRVLLLCRGISEYFVVESSILSAERGYALIQGGYAPILLLMNKIKLFEEHKGCQGAKRLRGVAIAGGTTNTTEQKGLERAVESKICLETSWGQLFCSYPLKLEVGRCDLAQAWKSCHRKLILLGALFFFNGFGSSKVRKFKVKASDLREVRVPAAITSPESELSEMNQKDEASAVRNQREVDPEEQKHELSEAVKLEGNGVLLSKQISEENVEEP 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03412 601 Gene3D - 188 357 - -
Vimu11g03412 601 Gene3D - 2 124 IPR038770 -
Vimu11g03412 601 MobiDBLite consensus disorder prediction 550 580 - -
Vimu11g03412 601 ProSiteProfiles RCK N-terminal domain profile. 188 319 IPR003148 GO:0006813
Vimu11g03412 601 MobiDBLite consensus disorder prediction 544 581 - -
Vimu11g03412 601 Pfam Sodium/hydrogen exchanger family 9 144 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu11g03412 601 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 189 326 IPR036291 -
Vimu11g03412 601 Pfam TrkA-N domain 189 311 IPR003148 GO:0006813
Vimu11g03412 601 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 127 385 - -
Vimu11g03412 601 FunFam Glutathione-regulated potassium-efflux system protein KefB 186 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03412 Vimu-Chr11 55250952 55257865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03412 11 377 Inorganic Solute Cotransporters AT4G04850 61.814 7.30e-151 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03412 K03455 - gmx:100798214 555.829