Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03399 TTGTACATTTATGACAGCATGAAATCAATCATTGATCGCTTTAACAAGCTCAACGAGGACCATGGTCGGCTAATGGATCCTGCTTCATCTGTCAAGTTTTGGCAGAGAGAAGCAGCATGCTTAAGGCAACAACTAGAACGTTTGCAAGAAAGCAACAGGCAACTGATGGGTGAAGAACTTTCTAATTTGAATATGAATCAGCTAAAAGATCTGGAAAATAAACTCCAAATTGGTTTGAGTAATGTTCAAATAAAAAAGGATCAAATGCTTAAAGATGAGATCAAAGTATTGCAACAAAAGGGAATCTTCATTCATCAACAAAATGAAGAACTTCGTACGAAGATAAACCTTTTACATGAAAATAATGCAGAACTACAGAAGGTAAATCATCAAGCAAACATTTTCTATCTGTCATTCATACTCTAA 426 0.3498 MYIYDSMKSIIDRFNKLNEDHGRLMDPASSVKFWQREAACLRQQLERLQESNRQLMGEELSNLNMNQLKDLENKLQIGLSNVQIKKDQMLKDEIKVLQQKGIFIHQQNEELRTKINLLHENNAELQKVNHQANIFYLSFIL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03399 141 Coils Coil 108 128 - -
Vimu11g03399 141 Coils Coil 31 58 - -
Vimu11g03399 141 ProSiteProfiles K-box domain profile. 31 121 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g03399 141 Pfam K-box region 29 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03399 Vimu-Chr11 55062157 55065677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03399 3 127 MADS-box Gene Family AT3G57230 48.000 1.75e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03399 K09264 - gmx:100779119 161.384