Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03398 ATGGGTAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACCAGCCGGCAAGTGACGTTTTCAAAGAGAAGAAGTGGGTTGGTGAAGAAAGCTAGAGAACTGTCTATTCTCTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCCAGTTCAAGCTTGAAATCTGTTATTGATCGCTATAACAAGGTCAAAGAGGACCATCATCAGTTAATGAACCCTGCTTCAGAAATCAAGAGAGAAGTAGCAAGTTTGAGGCAACAAGTGCAGTACATGCAAGAATGTTACAGGCAAATGATGGGCGAACAACTTTCTGGTTTGGATATTAAGGAGTTGGGGAATCTGGAAAATCGACTGGAGAGAAGTTTGAAGGGTGTTCGCATGAAAAAGGATCAAATTCTGATTGATGAGGTCAAAGAACTACACCAAAAGGGAAGCCAAGCCAATCAAGAAAATGCCGAACTTCATAGAAAGATAAATCTCATGCTCAAGGACAACGAAGAACTACAAAAGGTTATTGAAGCAAAAGGTAGAAAGGAAGGTGCTGCAACATCCAATCCTTCTTGCACTATCAGTTATGGATATGATATATTTGCTCCTATCAGTCTCAAGCTAAGCCAGCCACATCCTCATCACAGTGAACCACAAGCCAAAGCAATGAAACTGGGGTATTCCTCAAACTCATGCTCCTTGCTCTATAAATATGTTTAG 735 0.4136 MGRGKIVIRRIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTGKLYDYASSSLKSVIDRYNKVKEDHHQLMNPASEIKREVASLRQQVQYMQECYRQMMGEQLSGLDIKELGNLENRLERSLKGVRMKKDQILIDEVKELHQKGSQANQENAELHRKINLMLKDNEELQKVIEAKGRKEGAATSNPSCTISYGYDIFAPISLKLSQPHPHHSEPQAKAMKLGYSSNSCSLLYKYV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03398 244 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g03398 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vimu11g03398 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vimu11g03398 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g03398 244 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vimu11g03398 244 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vimu11g03398 244 Coils Coil 146 180 - -
Vimu11g03398 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu11g03398 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03398 Vimu-Chr11 55012656 55023948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03398 1 235 MADS-box Gene Family AT2G14210 58.333 7.19e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu11g03398 K-box 5.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03398 K09264 - gmx:100779647 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03398 11 55012656 55023948 Vimu2g00479 2 2732352 2739759 PCT