Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03396 ATGGCTTGGTGGCATAAGACTGTTCATAATCCAATTCTTTTCTGTCATGCAATGAGAACAATTTTCATCCTTCAAATACTCCCACTTGCAAACTCACTATCATTTGACTACCCCAACTTTAAGAATGGTGATGTAAAATGGGAAGGGGATGCTTCTGTTCTGAAAGGAGCTATCCAAGTCACTTCCAACACCATAGACCAAAACAACAATTACAGTGTTGGGAGAGTCACGAGTTTTGAACAGATGGTCCTCTGGGATATGAAGTCTAGAAAGCTTGCTGATTTCACTACTAAATTTTCCTTTGTTATCTTTTCAGAAAATAGATACTATGGAGATGGAATGGCCTTCTTCCTTGCTGACCCTAATCTCCCACTTCTAAAGGATATTAAAGAAGGAGGTGGTCTTGGACTTGTGGATGGCGAACAACAGTGGAGTTTGACACCTTCCACAACGAATTATAGGACCCTTCGGGTAGCACTCATCATTAAGTACAATTCAAGTACTCTTAATTTGAGCGTTTCATTCACAATGTACAATGATAGTAATACAGTTGAAGAATACATTTCATACAAGGTTGATTTAAGAGATCACTTACCAGGGAGGGTTGTTCTTGGTTTTTCTGCCGCAACAGGAAGATTGTATGAGGTGCATACATTGAGATCATGGTCATTTAGTTTGAGTCTACAAAGCGATGACAAAACAAATGAGGAAAAACCAGAAGCAGTTCCACCAGATTCTAGTCTTATTGATTCTAAAAAAGGAAAGAAAATAGGATTTTTGTCAGGGTTGGTTTTTACTTTCTTGTGGAAGAGGAGTAGAGATAGAAGAGAAGTGTTAGTTTTTGATGATGAATTCCCAAAGGGCACTGGACCTAAGAGCTTCTCCTATAATGAGCTAGCAAGTGCTACAAACAAATTTGCTGAGTCTGAGAAGCTGGGGCAAGGTGGTTTTGGTGCTGTGTATAAAGGTTATTTGAAAGACATGAAGTCCTATGCTGCTATCAAGAGAATATCAAGAGAGTCTAGACAGGGAATAAAGGAGTATGTGACAGAAGTGAAGGTAATAAGCCAATTGAGACATAGGAATTTAGTACAACTTATTGGTTGGTGTCATGAGAAGAATGACTTTGTCCTTGTATATGAGTTCATGCCAAATGGAAGCTTAGACTCTCACCTTTATGGAGTGAAAAGCTTCTTAACTTGGAGAGTGAGGTATAATATAGCTTTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGAGATATTAAATCAAGCAACATTATGTTGGATTCAAGTTTTAATGCTAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGACCATGAGAAAGGGTCACAAACAACACATATAGCAGGGACTAGGGGCTATATTGCACCTGAATATTTCAGTTCAGGAAAGGCTACTAAGGAATCTGATATTTACAGCTTTGGGGTTGTGTTGTTGGAGATAGCTTGTGGAAGAAAATGTGTTGAACTAAAAGCTGAGGAGAGTGAAATAACTCTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGGAGGTCACTTGAAGAAGTTGACCCAAAGTTATGTGGAGAATTTAATGAGAAACAAATGATCCGTTTAGTGGTTGTTGGCTATTGA 1668 0.3927 MAWWHKTVHNPILFCHAMRTIFILQILPLANSLSFDYPNFKNGDVKWEGDASVLKGAIQVTSNTIDQNNNYSVGRVTSFEQMVLWDMKSRKLADFTTKFSFVIFSENRYYGDGMAFFLADPNLPLLKDIKEGGGLGLVDGEQQWSLTPSTTNYRTLRVALIIKYNSSTLNLSVSFTMYNDSNTVEEYISYKVDLRDHLPGRVVLGFSAATGRLYEVHTLRSWSFSLSLQSDDKTNEEKPEAVPPDSSLIDSKKGKKIGFLSGLVFTFLWKRSRDRREVLVFDDEFPKGTGPKSFSYNELASATNKFAESEKLGQGGFGAVYKGYLKDMKSYAAIKRISRESRQGIKEYVTEVKVISQLRHRNLVQLIGWCHEKNDFVLVYEFMPNGSLDSHLYGVKSFLTWRVRYNIALGLASALLYLQEEWEQCVIHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTHIAGTRGYIAPEYFSSGKATKESDIYSFGVVLLEIACGRKCVELKAEESEITLVEWVWKLYGLGRSLEEVDPKLCGEFNEKQMIRLVVVGY 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03396 555 Gene3D - 30 147 - -
Vimu11g03396 555 Gene3D - 148 241 - -
Vimu11g03396 555 Gene3D Phosphorylase Kinase; domain 1 291 382 - -
Vimu11g03396 555 SMART serkin_6 306 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03396 555 ProSiteProfiles Protein kinase domain profile. 306 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03396 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vimu11g03396 555 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524
Vimu11g03396 555 PANTHER - 59 554 - -
Vimu11g03396 555 FunFam Lectin-domain containing receptor kinase A4.3 383 555 - -
Vimu11g03396 555 SUPERFAMILY Protein kinase-like (PK-like) 289 551 IPR011009 -
Vimu11g03396 555 Pfam Protein kinase domain 307 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03396 555 Gene3D Transferase(Phosphotransferase) domain 1 383 555 - -
Vimu11g03396 555 FunFam L-type lectin-domain containing receptor kinase IX.1 291 382 - -
Vimu11g03396 555 Pfam Legume lectin domain 32 141 IPR001220 GO:0030246
Vimu11g03396 555 Pfam Legume lectin domain 157 237 IPR001220 GO:0030246
Vimu11g03396 555 CDD lectin_legume_LecRK_Arcelin_ConA 33 228 IPR001220 GO:0030246
Vimu11g03396 555 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 233 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03396 Vimu-Chr11 54958109 54959932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03396 22 554 Receptor kinase-like Gene Family AT5G10530 44.147 1.10e-146 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g03396 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03396 - - gmx:100780181 867.84