Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03388 ATGAACAAAGGAAAAGAAAGGCGCACTTCTCATCTGAAGATGGATGATGACTTCCACGAGATAACTACAGAGATTAACTATCATGAATTGGCCACTGCAACCAACAACTTTGAAGAGACACATAAACTAGGCCAAGGTGGCTTGGGCTGTGTTTATAAAGGCTATTTCGAATACTTGAACTCCTATGTTGCTATAAAGAAGATATCAGCAGGTTTACCACAGGGTTTGAAGGAATATGCAGCAGAAGTGACGATCGTTAGCCAATTGAGGCACAAGAATTTGATGAAACTCACCGGTTGGTGCCATAAGAAGAATGATCTCTTCTTAATATACGAGTACATGCCAAATGGCAGCTTGGATTCTTGTCTTTTTGGTGGAGAGAAGTTCTTGTCTTGGAAAATGAGGGACATCAAATCAAGCAACATATTGCTGGACTCCAACTTCAACCCTAAGCTTGGGGACTTTAGCCAGGCAAGGCTGGTGGATCATGATAAATGGCCAGAAACGACGATAGCCACTGGAAGAAAAGCCGTTCACCTTGAAGACATGGAGGGTGAAGTATCAGTGGTTGAGTGGGTATGGGAGCTGTATGGATTGAAGAATCTCCTTGCAGCAGTAGATCCAAAGCTGCATGGGGAATTTGATGTGAAGCAAGTGGAATGCTTAGTGGTGGTTGGTCTTTGGTGTGCTAATCCAGATTTTGCATCCAGACCAACCATAAGGCAAGTTATAAAGGTGCTTAAGTTTGAAGCTTCTTTGCCAATTCTCTCACAGCAGATCCCATGCAAGCCTTTTTCTGTCCAATAA 807 0.43 MNKGKERRTSHLKMDDDFHEITTEINYHELATATNNFEETHKLGQGGLGCVYKGYFEYLNSYVAIKKISAGLPQGLKEYAAEVTIVSQLRHKNLMKLTGWCHKKNDLFLIYEYMPNGSLDSCLFGGEKFLSWKMRDIKSSNILLDSNFNPKLGDFSQARLVDHDKWPETTIATGRKAVHLEDMEGEVSVVEWVWELYGLKNLLAAVDPKLHGEFDVKQVECLVVVGLWCANPDFASRPTIRQVIKVLKFEASLPILSQQIPCKPFSVQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03388 268 SMART serkin_6 37 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03388 268 ProSiteProfiles Protein kinase domain profile. 37 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03388 268 SUPERFAMILY Protein kinase-like (PK-like) 21 256 IPR011009 -
Vimu11g03388 268 PANTHER - 171 249 - -
Vimu11g03388 268 Pfam Protein kinase domain 37 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03388 268 Gene3D Phosphorylase Kinase; domain 1 22 113 - -
Vimu11g03388 268 Gene3D Transferase(Phosphotransferase) domain 1 114 173 - -
Vimu11g03388 268 Gene3D Transferase(Phosphotransferase) domain 1 174 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03388 Vimu-Chr11 54760442 54761425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03388 24 265 Receptor kinase-like Gene Family AT5G10530 42.763 5.34e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g03388 Pkinase 1.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03388 - - lja:Lj4g3v0408370.1 326.635