Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03387 ATGGATGCTTCTGGATTACTGCTTAGGATCATTTTGTTCATCCTAATCATCGCCATTGCAATAACAAATGCTCACACTCAGTCTTTTCAGTGTCTCAGCTTCAGTTCAACTTGTATAAAGCACCTTAAGCTAGAAGGGAGTGCTTCTGCCTCAGGTTCTGCTATCCATCTCACAGAAGAGAACAATCTATTCCCAAGCAAATCGTTTGGGAGCGCAGGGCGAGTCACGTATGCTGAACGAATAAACCTTAGGGACAAGACTTCAAATGAACCAAGAGACTTCATTACCAAATTTTCCTTTGTTGTTTCCTCAAATCAGAGTATTTATGGAGATGAGACATGGTGGATAAATATTACACATAGGAAGGTCTGTAACTGTAGTATTGTATACAATTCTAGGAACAGTGTTTTGAATGTCTCTTACACTGGATACAAATTAAGTGATGGGAAAGTGAGAAAGACTACACAACATCTTTCATACTCTGTTGATATAAGGCAGAAATTACCAGACTCAGTTGTTGTTGGCATATCAGCTGCAACTGGAAAATATTCTGAACAGCATACCTTGCTCTCATGGTCGTTTAGCATCACCCCACCAAGTACGGACGATAAAGAGAAAGAAAGGAAGCCTGTCATGATAACATTGAAGGGAATAGGAATTGGTGCTGTCTTGTTTTTGAGAGGGTTTGGTGGTGTTTATAAAGGCTATTTCAAAGACTCCAACACCTATGCTGCTATAAAGAGGATATCAGCAGATTCTAAGCAGGGTGTAAAACAGTACACTGCAGAAGTGACTATCATTAGCCAATTGAGGCACAGGAATTTGGTGAAACTCACTGGTTGGTGCCACAAGAAGAATGATTTTCTCTTGATATACGAGTACATGGAAAATGGCAGCTTAGACTCTAAACTTTTTCGGGGAGAAAGTATATTACCGTGGGAAGTGAGGTACAACATAGCGTTGGGCTTGGCCTCAGCATTGCTTTACCTACAAGAAGAATGGGAGAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAATCCCAAGCTTGGTGACTTTGGCCTAGCTAGGTTGGTGGATCATGATAAAGGGTCAGAAACCACAGACGTGGAGTCAGATATATTCAGTTTTGGGGTTGTTCTGTTGGAGATAGCAACTGGAAGAAAAGCCATTCACCATAAACACATGGAGGGTGAGGTATCAGTGGTTGAGTGGGTGTGGAAGCTATACGAATTGAGAAATCTGCTTGCAGCAGCAGATGAAAACCTACGTGGGGAATTTGATGTGCAGCAAATGGAATGCTTACTGGTAGTTGGTCTTTGGTGTGCTAATCCCGATTCAGCATCCAGACCTGCAATAAGGCAAGTGATTAACGTCCTTAACTCTGAATCTTCTTTACCAATTCTTCCACTGCAGATGCCAGTACAAGGCTGTTCATGA 1464 0.4167 MDASGLLLRIILFILIIAIAITNAHTQSFQCLSFSSTCIKHLKLEGSASASGSAIHLTEENNLFPSKSFGSAGRVTYAERINLRDKTSNEPRDFITKFSFVVSSNQSIYGDETWWINITHRKVCNCSIVYNSRNSVLNVSYTGYKLSDGKVRKTTQHLSYSVDIRQKLPDSVVVGISAATGKYSEQHTLLSWSFSITPPSTDDKEKERKPVMITLKGIGIGAVLFLRGFGGVYKGYFKDSNTYAAIKRISADSKQGVKQYTAEVTIISQLRHRNLVKLTGWCHKKNDFLLIYEYMENGSLDSKLFRGESILPWEVRYNIALGLASALLYLQEEWEKCVLHRDIKSSNIMLDSNFNPKLGDFGLARLVDHDKGSETTDVESDIFSFGVVLLEIATGRKAIHHKHMEGEVSVVEWVWKLYELRNLLAAADENLRGEFDVQQMECLLVVGLWCANPDSASRPAIRQVINVLNSESSLPILPLQMPVQGCS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03387 487 Pfam Legume lectin domain 27 110 IPR001220 GO:0030246
Vimu11g03387 487 Pfam Legume lectin domain 114 207 IPR001220 GO:0030246
Vimu11g03387 487 FunFam Lectin-domain containing receptor kinase A4.3 295 379 - -
Vimu11g03387 487 Gene3D Phosphorylase Kinase; domain 1 227 295 - -
Vimu11g03387 487 Pfam Protein kinase domain 228 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03387 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Vimu11g03387 487 ProSiteProfiles Protein kinase domain profile. 218 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03387 487 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 202 IPR013320 -
Vimu11g03387 487 PANTHER - 113 471 - -
Vimu11g03387 487 Gene3D Transferase(Phosphotransferase) domain 1 377 484 - -
Vimu11g03387 487 Gene3D Transferase(Phosphotransferase) domain 1 296 376 - -
Vimu11g03387 487 SMART serkin_6 212 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03387 487 Gene3D - 24 111 - -
Vimu11g03387 487 SUPERFAMILY Protein kinase-like (PK-like) 216 468 IPR011009 -
Vimu11g03387 487 Gene3D - 112 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03387 Vimu-Chr11 54748820 54750751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03387 202 483 Receptor kinase-like Gene Family AT5G10530 50.804 2.42e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g03387 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03387 - - vum:124829843 484.952